Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 77 / 6e-17 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G07720 66 / 9e-13 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT2G28630 66 / 9e-13 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G04220 64 / 3e-12 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G01120 64 / 3e-12 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT5G43760 64 / 4e-12 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT2G26250 58 / 4e-10 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT4G34510 55 / 3e-09 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT5G49070 55 / 4e-09 KCS21 3-ketoacyl-CoA synthase 21 (.1.2) AT2G26640 55 / 4e-09 KCS11 3-ketoacyl-CoA synthase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002191 [exp] 118 / 1e-31 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 110 / 2e-28 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10002192 [exp] 98 / 2e-24 AT5G04530 389 / 1e-132 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 85 / 2e-19 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 84 / 3e-19 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 84 / 4e-19 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 80 / 1e-17 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033627 [exp] 68 / 1e-13 AT5G04530 376 / 2e-128 3-ketoacyl-CoA synthase 19 (.1) Lus10015222 [exp] 67 / 2e-13 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212600 [exp] 83 / 7e-19 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 78 / 5e-17 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 76 / 2e-16 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 75 / 5e-16 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 72 / 3e-15 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.001G234500 [exp] 70 / 3e-14 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.009G026800 [exp] 67 / 2e-13 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.008G048500 [exp] 67 / 3e-13 AT5G04530 337 / 2e-113 3-ketoacyl-CoA synthase 19 (.1) Potri.008G160000 [exp] 62 / 2e-11 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 61 / 3e-11 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein
Representative CDS sequence Show only first row Show all	>Lus10002189 pacid=23158737 polypeptide=Lus10002189 locus=Lus10002189.g ID=Lus10002189.BGIv1.0 annot-version=v1.0 ATGTCCGAAAAATCAAGCAAATCTTTTTGTTACCTACTTGCGTACAAGTGCTACAAAGGTCCAGACGAGCTGAAGCTCACCGCAGAAGCCGCCGCCCAAA TAATCCTTCCGCGACTACAAGTTCTGTTTAAAAACGATATCCCATTCCAACATTGGAGAGGAAAACTTACGTCTCAAGAAACTACCTCCTTGGACGAGAA GCATCCCCCGAGCTTAGTGACCGCCTCCAAGAGTTTGCTGATGTCACTTTCACCACCTTGGACGACCTCTTCGCCACGTCAGGGATCTCCCCTTCACAGA TTGACATCCTCGTCGCCTCCTCCTCACTCTTTGCCCCTGTACAATATGAAGGAAGGAGTCAAATCGTATAATTTGACCGGGATGGTGGCACTTGACCTAG TCTACCAAACATTCAAGACCCAAGCGAACAGTTTCGCGCTCGTGATCACATTGGAATCGACTGCTGGTAATTGGTATGTCGGCACGGATAGGTCGATGAT GTTGTCCAACAGTTTAGTCCGGTAA
AA sequence Show only first row Show all	>Lus10002189 pacid=23158737 polypeptide=Lus10002189 locus=Lus10002189.g ID=Lus10002189.BGIv1.0 annot-version=v1.0 MSEKSSKSFCYLLAYKCYKGPDELKLTAEAAAQIILPRLQVLFKNDIPFQHWRGKLTSQETTSLDEKHPPSLVTASKSLLMSLSPPWTTSSPRQGSPLHR LTSSSPPPHSLPLYNMKEGVKSYNLTGMVALDLVYQTFKTQANSFALVITLESTAGNWYVGTDRSMMLSNSLVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002189 [exp]	0	1

Compare expression of checked genes

Lus10002189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.