Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28630 170 / 7e-52 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 169 / 2e-51 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT5G04530 160 / 3e-48 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT3G10280 125 / 3e-35 KCS14 3-ketoacyl-CoA synthase 14 (.1) AT5G49070 125 / 4e-35 KCS21 3-ketoacyl-CoA synthase 21 (.1.2) AT2G46720 125 / 4e-35 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT4G34250 122 / 8e-34 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT4G34510 120 / 4e-33 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT4G34520 120 / 8e-33 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT2G15090 119 / 1e-32 KCS8 3-ketoacyl-CoA synthase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002191 [exp] 217 / 6e-70 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 218 / 2e-69 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 173 / 7e-53 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 172 / 8e-53 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 162 / 7e-49 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10005434 [exp] 162 / 1e-48 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 162 / 1e-48 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10033627 [exp] 159 / 2e-48 AT5G04530 376 / 2e-128 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 162 / 1e-47 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026800 [exp] 174 / 2e-53 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.013G119600 [exp] 174 / 2e-53 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.001G234500 [exp] 172 / 9e-53 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.013G119800 [exp] 167 / 6e-51 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G212600 [exp] 165 / 5e-50 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 164 / 6e-50 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 162 / 5e-49 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G125300 [exp] 119 / 1e-32 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.014G196200 [exp] 118 / 2e-32 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.001G211400 [exp] 117 / 3e-32 AT1G71160 563 / 0.0 3-ketoacyl-CoA synthase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10002190 pacid=23158746 polypeptide=Lus10002190 locus=Lus10002190.g ID=Lus10002190.BGIv1.0 annot-version=v1.0 ATGATCAATTTGAAGGCAGGGATCCAACACTTTTGCGTCCACACAGGCGGGAGGGCAGTGATCGACGGGTTCCAAAAGAGCTTCGGGTTAGAGGAATATG ATATAGAACTTTTTAGAATGTCACTCCATCGGTTCGGGAACACGTCGTCTAGTAGCGTGTGGTATGTGTTGGGGTATATGGAGGCTAAGAAGAGGCTGAA GAAAGGAGACAAGGTGTTGATGGTTGGATTGGGTGCTTGGTTTTTGTGCAACACTTGTGTTTGGTCGGTTGTGAAGGACTTGGGAGATGGCAATGTGTGG GGAGATTGTGTTCATGGTTACCCTCCCAAGACTTTGGTCAACCCTATCGGGGAGTTAAGCATCAATTGGCCTTTTGATGATTGA
AA sequence Show only first row Show all	>Lus10002190 pacid=23158746 polypeptide=Lus10002190 locus=Lus10002190.g ID=Lus10002190.BGIv1.0 annot-version=v1.0 MINLKAGIQHFCVHTGGRAVIDGFQKSFGLEEYDIELFRMSLHRFGNTSSSSVWYVLGYMEAKKRLKKGDKVLMVGLGAWFLCNTCVWSVVKDLGDGNVW GDCVHGYPPKTLVNPIGELSINWPFDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10002190 [exp]	0	1
					Lus10029509 [exp]	2.4	0.6775
AT3G04560			unknown protein		Lus10035363 [exp]	14.0	0.5698
					Lus10027052 [exp]	16.2	0.5432
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10008626 [exp]	20.8	0.6113
					Lus10003223 [exp]	28.0	0.5148
					Lus10003555 [exp]	30.2	0.4836
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027881 [exp]	37.8	0.4759
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10005541 [exp]	40.3	0.4458
AT2G07180			Protein kinase superfamily pro...		Lus10008546 [exp]	43.8	0.4484
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	44.7	0.5125

Compare expression of checked genes

Lus10002190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.