Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 471 / 3e-164 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT2G28630 438 / 7e-151 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 421 / 4e-144 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT1G01120 327 / 7e-107 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G46720 306 / 2e-99 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G25450 303 / 4e-98 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G68530 301 / 2e-97 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G15090 301 / 3e-97 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT4G34510 293 / 2e-94 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G19440 293 / 9e-94 KCS4 3-ketoacyl-CoA synthase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039906 [exp] 850 / 0 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 513 / 3e-180 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 511 / 2e-175 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 459 / 7e-159 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 457 / 3e-158 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10002192 [exp] 443 / 1e-153 AT5G04530 389 / 1e-132 3-ketoacyl-CoA synthase 19 (.1) Lus10005434 [exp] 433 / 1e-148 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 424 / 5e-145 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10033627 [exp] 417 / 4e-144 AT5G04530 376 / 2e-128 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119600 [exp] 494 / 6e-173 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 473 / 7e-165 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 458 / 4e-159 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 452 / 1e-156 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.010G212600 [exp] 451 / 3e-156 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 446 / 1e-154 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 395 / 1e-134 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 323 / 2e-105 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 317 / 4e-103 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.010G125300 [exp] 307 / 2e-99 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10002191 pacid=23158735 polypeptide=Lus10002191 locus=Lus10002191.g ID=Lus10002191.BGIv1.0 annot-version=v1.0 ATGGATCTTTTCTTAGTAGCTTTAATTACTCTGCCTTTCCTCCTATTCATAACCATCAACTTCCTCTCCAAACTTATCTCCAACAAATCCAACCAATGTT ACCTACTAGCTTACAAGTGCTACAAAGGTCCCGACGAGCTCAAACTCAGCGCAGAAGCCGCAGCTGAGATCTCACTCCGTAACAAAAACCTCGGCCTCGA AGAGTACCAGTTCTTGGTCAAAACCATGGCTAGGTCGGGCATTGGAGAGGAGACTTATATCCCAAGAAACATCTACGAAGGCCGTGAAGCGAACCCTTCA CTTCCTGACTGCCTCGAGGAGCTCACCGAGGTCACGTTCACCACGTTGGACGACCTCTTTGCCACGTCAGGAGTCTCCCCTTCTCAGATCGATATCATAA TCACGACCGGTTCCCTCTTCGCCCCTGTCCCTTCCTTGACAAGCCGGATAGTGAACCGGTACAAGATGAAGGAAGGGATCAAGTCGTATAGTTTGACCGG GATGGGGTGCAGCTCCAGCCTGATCGCCGTTGACTTGATAAAAAACTCGTTCAAGACTCGACCGAACAGTTTCGCGATTGTGATTGCGATGGAACTGACT GCTGCCAACTGGTATGCTGGCAGGGACAGATCCATGATGCTTTCCAACGTGCTGTTCAGGTCAGGAGGAGGGTCACTCCTCCTGACCAACCACCCTTCTT GGGCCCACTGTGCCATGCTGAAACTTGACACGATAGTGAGGACCCACGTGTCGCATGACGAGGCGTACGAGTGCGCCATCCACGTTGAGGACAAGGAAGG CCACCTCGGAGCACGCCTCACCAAGGCTCTACCGAGCGTGGCCATGCAAGCCATGGCGGAGAACTTCGAAGCTCTCCTTCCAAAAGTGCTTCCTCTATGG GAAATTATCCGGTTTTTCATCGCTACCCGTTGCTCGAAAATCAAACCAGTTATCAACATGAAGTTAGGGATCCAACACTTCTGCTTCCACACAGGCGGGA GGGCGGTGATCGACGGGTTCCAAAGCAGCTTCAGGCTGGAGGATTACGATCTAGAACCTTCTAGAATGTCGCTGCATCGGTTCGGGAACACGTCATGCAG TAGCCTATGGTATGTGTTGGGGTACATGGAGGCTAAGAAGAGGCTGAAGAAAGGGGACAAGGTATTGATGGTTGGGTTGGGAGCTGGGTTCCTGTGCAAC ACTTGTGTTTGGACGGTTGTGAAGGACTTGGGAGATGGGAAAAATGTTTGGGGAGATTGCGTTGACCGTTACCCGCCGAAGACGTTGGTTAACCCGATCG GGGAGGTGATGGACTGGCTTTTCGATGAATCGATGAGTTTAATTAGGTTTGAGGATTACGTTCGTGGGGAAATGTATCTTCGTAAAGGTATAAAAGCGTG A
AA sequence Show only first row Show all	>Lus10002191 pacid=23158735 polypeptide=Lus10002191 locus=Lus10002191.g ID=Lus10002191.BGIv1.0 annot-version=v1.0 MDLFLVALITLPFLLFITINFLSKLISNKSNQCYLLAYKCYKGPDELKLSAEAAAEISLRNKNLGLEEYQFLVKTMARSGIGEETYIPRNIYEGREANPS LPDCLEELTEVTFTTLDDLFATSGVSPSQIDIIITTGSLFAPVPSLTSRIVNRYKMKEGIKSYSLTGMGCSSSLIAVDLIKNSFKTRPNSFAIVIAMELT AANWYAGRDRSMMLSNVLFRSGGGSLLLTNHPSWAHCAMLKLDTIVRTHVSHDEAYECAIHVEDKEGHLGARLTKALPSVAMQAMAENFEALLPKVLPLW EIIRFFIATRCSKIKPVINMKLGIQHFCFHTGGRAVIDGFQSSFRLEDYDLEPSRMSLHRFGNTSCSSLWYVLGYMEAKKRLKKGDKVLMVGLGAGFLCN TCVWTVVKDLGDGKNVWGDCVDRYPPKTLVNPIGEVMDWLFDESMSLIRFEDYVRGEMYLRKGIKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	0	1
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10014204 [exp]	2.2	0.9692
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	12.5	0.9759
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	15.2	0.9704
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	22.6	0.9701
					Lus10020448 [exp]	23.0	0.8797
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10013103 [exp]	23.2	0.9576
AT2G48030			DNAse I-like superfamily prote...		Lus10008177 [exp]	25.9	0.9025
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	26.1	0.9701
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10000898 [exp]	26.5	0.9330
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10024334 [exp]	29.1	0.8682

Compare expression of checked genes

Lus10002191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.