Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 389 / 1e-132 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT2G28630 349 / 9e-117 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 348 / 2e-116 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT1G01120 290 / 3e-93 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G46720 284 / 1e-91 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G19440 276 / 1e-87 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G26250 274 / 1e-86 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT4G34520 271 / 4e-86 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT1G25450 270 / 7e-86 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G68530 269 / 2e-85 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002191 [exp] 463 / 1e-161 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 464 / 3e-160 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 422 / 8e-142 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 404 / 2e-138 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 389 / 3e-132 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 385 / 1e-130 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10005434 [exp] 362 / 2e-121 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 354 / 2e-118 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10033627 [exp] 349 / 3e-118 AT5G04530 376 / 2e-128 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119600 [exp] 433 / 5e-150 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 421 / 4e-145 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 412 / 9e-142 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G212600 [exp] 410 / 6e-141 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 372 / 2e-126 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 366 / 1e-123 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 357 / 6e-120 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.006G218000 [exp] 281 / 1e-89 AT2G26250 896 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.002G178000 [exp] 281 / 2e-89 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.001G211400 [exp] 275 / 2e-88 AT1G71160 563 / 0.0 3-ketoacyl-CoA synthase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10002192 pacid=23158743 polypeptide=Lus10002192 locus=Lus10002192.g ID=Lus10002192.BGIv1.0 annot-version=v1.0 ATGGAGCTGCTCTTGTTAACAGCTTCGTTACTTATCATCCTCCTCCTCCTCCTGCTAACAATCTTTCACAATATGAAAGCAGACCAATCCTGTTGCTACC TGCTAGCCTACCATTGCTACAAACCTCCTGACCACTTGAAGGTCACATCCGCTAAGTACGCTGAGTTCATATTTCCCAAGAGTGGGGATACTGATGATGC TCGTTTCCTCCTCAGATCCATGGCCACTTCGGGCCTCGGGGAATATTCCTACTGTCCGAGGAATTTTCTCGAATCCCGGCCTGCAACTCTCCAGGATTCT CTTTGCGAAGCGGACGATGCAATTTTCCAGACCCTTGACAGGTTGTTCGCCACGTCAGGAATCTCGCCTTCTCAGATCGACATCCTAGTCACCACTGTCT CCCTCTTCACCCCGGTACCGTCCATCTCAACCAGGATCGTGAACCGGTACAACATGAAGGAAGGGGTTAAGTCGTACTCTCTGACCGGGATGGGTTGCAG CTCGGGGATGGTTGGAGTTGATTTGGTGAAGCAGCTGTTTAGGACCCGACCGGACTCCTTTGCGGTCGTGATCGCTGCAGAGTCAATCGGGGCCCATTTG TACAGGGGGCGTGATAGGTCGATGATGCTCCCAAATGTTGTATTTAGAAACGGAGGCTGCTCGCTCCTCTTGACCAATAAACGGTCGTGGAAGGAGCGAG CATTGTTGAAACTAACAGCTGTTGTCCGGGCCCACATGTCGGACGACGAGTCCTACCACAATGTGGTCCAGGTGGAGGACGATGAGGGGTATCCAGGATT TCGAGTTTCGAGAGATTCGACTAAGACATCACGACAAGCATTGGTGGCAAATTTTCACGTCCTTCTTCCAAAAGTGCTGCCGTTTTGGGAGATTGTCCGG TTCGCGATGGCAAACTATTACTACAAAGGTAAGGCGGTGGTCAACTTGAAAAGTGGTGTGCAACATTTCTGCGTGCATACGAGCCGGAAGGCGGTGATTG ACACGTTGGGGACTAGTCTAGGACTTGATGAGTACGATCTAAAACCTTCTAAAATAAAGCTTCGACAATTTGGATACACATCGTGCAGCAGCCCCTGGTA CGTGTTTGGGTATATGGAGGCTAAGAAGAGGCTGAAGACAGGTGATAAGGTGTTGATGATTGGGTTGGGAGCTGGGTTTATGTGCAATACTTGTGTTTGG CTGGTTATGAGGGATGACTTGGAGGATTTGAATGTGTGGAGGGGTTTCATGTGA
AA sequence Show only first row Show all	>Lus10002192 pacid=23158743 polypeptide=Lus10002192 locus=Lus10002192.g ID=Lus10002192.BGIv1.0 annot-version=v1.0 MELLLLTASLLIILLLLLLTIFHNMKADQSCCYLLAYHCYKPPDHLKVTSAKYAEFIFPKSGDTDDARFLLRSMATSGLGEYSYCPRNFLESRPATLQDS LCEADDAIFQTLDRLFATSGISPSQIDILVTTVSLFTPVPSISTRIVNRYNMKEGVKSYSLTGMGCSSGMVGVDLVKQLFRTRPDSFAVVIAAESIGAHL YRGRDRSMMLPNVVFRNGGCSLLLTNKRSWKERALLKLTAVVRAHMSDDESYHNVVQVEDDEGYPGFRVSRDSTKTSRQALVANFHVLLPKVLPFWEIVR FAMANYYYKGKAVVNLKSGVQHFCVHTSRKAVIDTLGTSLGLDEYDLKPSKIKLRQFGYTSCSSPWYVFGYMEAKKRLKTGDKVLMIGLGAGFMCNTCVW LVMRDDLEDLNVWRGFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002192 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	4.7	0.8230
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	4.7	0.8099
AT1G21590			Protein kinase protein with ad...		Lus10023981 [exp]	6.3	0.7523
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012400 [exp]	9.5	0.8025
					Lus10007144 [exp]	13.6	0.8021
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	15.0	0.7892
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	15.9	0.7786
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	17.1	0.7883
					Lus10023767 [exp]	18.2	0.7664
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	22.4	0.7667

Compare expression of checked genes

Lus10002192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.