Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58100 144 / 3e-44 PDCB5 plasmodesmata callose-binding protein 5 (.1) AT2G30933 99 / 1e-25 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G29380 91 / 4e-22 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G55180 89 / 3e-21 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66870 84 / 4e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G05430 84 / 4e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT3G55430 88 / 8e-21 O-Glycosyl hydrolases family 17 protein (.1) AT1G66855 83 / 8e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G05790 87 / 2e-20 O-Glycosyl hydrolases family 17 protein (.1) AT5G35740 82 / 2e-20 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039907 [exp] 259 / 2e-89 AT3G58100 158 / 1e-49 plasmodesmata callose-binding protein 5 (.1) Lus10012324 [exp] 89 / 3e-23 AT5G35740 164 / 8e-54 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10007342 [exp] 92 / 8e-23 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10031443 [exp] 93 / 2e-22 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 91 / 2e-22 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10023276 [exp] 88 / 4e-22 AT4G05430 146 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10038529 [exp] 88 / 9e-22 AT4G05430 146 / 9e-45 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10001516 [exp] 91 / 1e-21 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10039179 [exp] 91 / 2e-21 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091500 [exp] 171 / 1e-54 AT3G58100 145 / 2e-44 plasmodesmata callose-binding protein 5 (.1) Potri.013G119500 [exp] 145 / 6e-45 AT3G58100 128 / 6e-38 plasmodesmata callose-binding protein 5 (.1) Potri.019G007800 [exp] 97 / 1e-25 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 97 / 1e-25 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 102 / 2e-25 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.013G003500 [exp] 100 / 7e-25 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 95 / 4e-24 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.006G016800 [exp] 91 / 1e-23 AT5G35740 156 / 1e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.017G055700 [exp] 92 / 2e-23 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.007G111000 [exp] 91 / 3e-23 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10002193 pacid=23158718 polypeptide=Lus10002193 locus=Lus10002193.g ID=Lus10002193.BGIv1.0 annot-version=v1.0 ATGGATTCCAAGTTCAGTCTGATACTCCTACTGCTTCTAAGCCTCTGTCTCCCGCCACTGTGGGCCGATCCGAGCGGCGCGATAGTGCCGAGGGAGCTGT GGTGCGTGGCAAAGAACAACGCGCCAGACGCAGCGCTCCAGTCGGCGATCGACTGGGCTTGCGGTGCCGGCGGCGCGAATTGCTCTCCGATACAGCAGGG TGGGCCCTGCTACGACGACAGCGACCTCCAGAGGGCGGCCTCATGGGCTTTCAACGACTACTTCTTGAAGAACGGGATGACTGACGACGCTTGCAACTTC AGCAACACCGCCGCCCTCATTTCTCTCAACCCCAGCCGTGGCAATTGCAAGTTCCCTTCGAGCTCTGGTACGAGTAGCTTTTCGACAGAAACAACAATAG GGATGGGGAGGAGCGACAGTGCAGATATGAGCAGCTGCATTAATCGCATTATTGCAGGTAGCAGCACATGGTGTTGGGGTTTGCTAGCTGGCTATAATTT GTTTATGATCTTGTTGTTTAGATAG
AA sequence Show only first row Show all	>Lus10002193 pacid=23158718 polypeptide=Lus10002193 locus=Lus10002193.g ID=Lus10002193.BGIv1.0 annot-version=v1.0 MDSKFSLILLLLLSLCLPPLWADPSGAIVPRELWCVAKNNAPDAALQSAIDWACGAGGANCSPIQQGGPCYDDSDLQRAASWAFNDYFLKNGMTDDACNF SNTAALISLNPSRGNCKFPSSSGTSSFSTETTIGMGRSDSADMSSCINRIIAGSSTWCWGLLAGYNLFMILLFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	0	1
AT2G22560			Kinase interacting (KIP1-like)...		Lus10025717 [exp]	3.0	0.8517
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	4.1	0.8120
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	6.0	0.8451
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	6.6	0.8228
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	7.0	0.8341
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	7.2	0.8492
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	7.2	0.8450
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	8.0	0.8315
AT3G60660			unknown protein		Lus10036493 [exp]	9.2	0.8186
AT3G27090			DCD (Development and Cell Deat...		Lus10041557 [exp]	11.6	0.7825

Compare expression of checked genes

Lus10002193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.