Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42350 107 / 2e-28 RING/U-box superfamily protein (.1) AT2G42360 100 / 7e-26 RING/U-box superfamily protein (.1) AT3G16720 99 / 1e-24 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G72310 87 / 5e-20 ATL3 RING/U-box superfamily protein (.1) AT5G05810 87 / 1e-19 ATL43 RING/U-box superfamily protein (.1) AT4G15975 84 / 1e-19 RING/U-box superfamily protein (.1) AT2G34000 81 / 3e-19 RING/U-box superfamily protein (.1) AT2G35420 83 / 6e-19 RING/U-box superfamily protein (.1) AT5G58580 84 / 9e-19 ATL63 TOXICOS EN LEVADURA 63 (.1) AT2G27940 82 / 1e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005104 [exp] 157 / 2e-49 AT2G42350 90 / 9e-24 RING/U-box superfamily protein (.1) Lus10005105 [exp] 120 / 2e-34 AT2G42360 54 / 1e-11 RING/U-box superfamily protein (.1) Lus10037490 [exp] 91 / 4e-21 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10009511 [exp] 88 / 5e-20 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10006493 [exp] 87 / 5e-20 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10005275 [exp] 84 / 5e-20 AT2G42360 104 / 2e-28 RING/U-box superfamily protein (.1) Lus10011702 [exp] 87 / 1e-19 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10023617 [exp] 86 / 2e-19 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10034953 [exp] 86 / 3e-19 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091400 [exp] 141 / 3e-41 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 99 / 4e-25 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 94 / 1e-22 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.001G279200 [exp] 92 / 2e-22 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.008G219200 [exp] 92 / 4e-22 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.009G073900 [exp] 90 / 2e-21 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.001G212101 [exp] 89 / 4e-21 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 88 / 6e-20 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 87 / 1e-19 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.003G073300 [exp] 85 / 2e-19 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10002194 pacid=23158721 polypeptide=Lus10002194 locus=Lus10002194.g ID=Lus10002194.BGIv1.0 annot-version=v1.0 ATGGCGCAACCAGCTCCGGCACCGGCGTCCGTCCACTTACTCCCTCCCTTCGGCTACATCGACAGCACCGGCGTCCTCGTCTTCGATCCGTACCACATCG AAAGGCAATACAACCTACCTCGCCGCCGCCACTCCCCTTACGACATGAACAGCAAGATCATGCTCGCCGCAATCATTTCTCTTTCCCTCGTCAGCGCCGT AGTCATCCTCCTCCACCTCTATGCCCGCTACGTCCTCCGCCGCCGCTACCGCCAGAACGTCTTAATTACAACCGACGGCGGTGCAACGACGATCCCACGA AAGACCGGCCTGGACCCCACCGTGATCGCCTCCCTCCCGATCTCTGCTTACAGGCAAGGGTCATCAAACGACGCCGTGGAGTGCGCGGTGTGTCTGAGTC TGCTCGAAGAGGATGAGATGGTGAGGAGCCTGCCCAATTGCGGTCATGGATTTCATGCCGAATGTGTAGACAAGTGGCTTAGCTGTCACACCACGTGTCC AATTTGTCGGACTGAGGCTGAGCCGCCAGTTACAATTAATATTGAGCCGGAACCGCGGGAGGATGCGAAAGTGGTGCCCACTGAAGCGGCAGCGTTGAGC TCCAGAATGGGTTCGTTTAAAAGGATGCTGAGCAGGGAACGGTCGTCCAGGAGAATGCAGATTCAGATTCGAGAAGATCAAGGAGGGCAAGATCTCCAGA GACAGTAA
AA sequence Show only first row Show all	>Lus10002194 pacid=23158721 polypeptide=Lus10002194 locus=Lus10002194.g ID=Lus10002194.BGIv1.0 annot-version=v1.0 MAQPAPAPASVHLLPPFGYIDSTGVLVFDPYHIERQYNLPRRRHSPYDMNSKIMLAAIISLSLVSAVVILLHLYARYVLRRRYRQNVLITTDGGATTIPR KTGLDPTVIASLPISAYRQGSSNDAVECAVCLSLLEEDEMVRSLPNCGHGFHAECVDKWLSCHTTCPICRTEAEPPVTINIEPEPREDAKVVPTEAAALS SRMGSFKRMLSRERSSRRMQIQIREDQGGQDLQRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	1.7	0.9934
					Lus10010257 [exp]	2.4	0.9939
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	2.4	0.9943
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10015521 [exp]	5.5	0.9853
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	6.0	0.9898
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	7.3	0.9880
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	7.4	0.9908
AT4G37290			unknown protein		Lus10010255 [exp]	7.5	0.9918
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	8.5	0.9886
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021311 [exp]	9.4	0.9865

Compare expression of checked genes

Lus10002194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.