Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000463 [exp] 133 / 1e-38 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091300 [exp] 55 / 6e-10 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.013G119400 [exp] 48 / 2e-07 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002195 pacid=23158729 polypeptide=Lus10002195 locus=Lus10002195.g ID=Lus10002195.BGIv1.0 annot-version=v1.0 ATGATGGGCCAAGATGGTTCGTCGGCGGCGTTTGCTGCATCTTCTTCTTCTTCTTCTCAGAGGGGTCCCCTTCAGTCCAATGGGTTTTTCGGGCGCGCGT GGAACGATGTCGTTCCCATGGGCACGGAGAATCATCATAATCATCAACACCACAACCAACAGCACGAAAGAGCGTACGAGTTCCATCAGTCGGTGTTGTT CGGGAGTAGGTTTCTTGGGTCGTCCGAGGGAATTCATAATCAAGGGTTCAGAATTCCAGCCAGGATCCACGGAGGCGAGCAAGAGGGTGGCTGCGATAGG GCGGGATCCTCGTCTTCTCCCGGCGGCCGTTCAGCTGAGCATTGA
AA sequence Show only first row Show all	>Lus10002195 pacid=23158729 polypeptide=Lus10002195 locus=Lus10002195.g ID=Lus10002195.BGIv1.0 annot-version=v1.0 MMGQDGSSAAFAASSSSSSQRGPLQSNGFFGRAWNDVVPMGTENHHNHQHHNQQHERAYEFHQSVLFGSRFLGSSEGIHNQGFRIPARIHGGEQEGGCDR AGSSSSPGGRSAEH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Lus10002195 [exp]	0	1
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Lus10000463 [exp]	1.0	0.9616
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	4.9	0.8788
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	6.9	0.8570
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017925 [exp]	10.4	0.8147
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10038512 [exp]	12.6	0.8131
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	13.6	0.8156
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	15.0	0.8225
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	16.2	0.8121
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	18.7	0.8216
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	19.4	0.8219

Compare expression of checked genes

Lus10002195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.