Plant FIBer expression Database

Lus10002197 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42560 92 / 3e-19 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
AT3G53040 50 / 2e-06 late embryogenesis abundant protein, putative / LEA protein, putative (.1)
AT2G36640 48 / 1e-05 ATECP63 embryonic cell protein 63 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000465
[exp]
595 / 0 AT2G42560 207 / 6e-59 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G118600
[exp]
156 / 2e-41 AT2G42560 91 / 5e-19 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Potri.019G090300
[exp]
134 / 7e-34 AT2G42560 85 / 3e-17 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Lus10002197 pacid=23158738 polypeptide=Lus10002197 locus=Lus10002197.g ID=Lus10002197.BGIv1.0 annot-version=v1.0
ATGATGGCTTCTCATTTCGAGTCCATCATTCACGAATCCACCCCTCATGACTCTCACCATCTTCAGCAGCATTCGAAAGATGCTGACAACCAGACAACCA
AGCCGACATCTGGTGATGGTGGTGGCACCTACACTTTTGGCAAGTTTGAAATGTCTGAAGGAGGAGGCCAAGAAGGCAAGGGAAGCCATACTATTGACGA
AGAACAACTCTCCCTTAATGAGATTGCCAAGCTCAGAGGCATTTCTCAGCAGAATTCGGCCGAAGCTTTGAATGCTGCTCACCAGAGGTATGAGCATTCT
AAAGACAAAGGGGGCTCGCAAGTCGATACTCAAGGAGCTCGAAAGGGATCACAAGCCACTAATTCTGTTGGCCAAGGAGTTCAGCGAGCTACTCAGGCCG
TGCAAGAGGAAGGATCTCAAGCTGCAGAAGCTGCTCGTGGAGGAGCTCAGCGAGCTTCTCAGACTGTACAAGACGAAGGATCTCAAGCTGCGGAAGCTGC
CCATGTAGGAGCTCAGCGAGCTTCTCAAACTATGCAAGAGAAGGCTTATCAGGCAAGAGATATTGCGGCCGAGAAAGGCACACAAGCAAAAGAGTGTGTT
ATGCAGGGTGCTCGGAGGACTTCACAATACGCCGGAGAGAAGGCTGCCCAAGCAAGAGAAGCTGCTGCTCAAGGAGCTCACAAGACTTCAGACTACTTGA
CTGAGACAGGGAGAGCCACCAAGGACACTGTCGCAGAGAAAGCCGCTCAAGCCAAAGATAATGTAGCCGAAGGAGCACAGAGGACTTCAGGTTACATGGC
GGAGCAAGGGAGAGCGGCCAAGGACACCGTCGCCGGAGGAGCACAGAGGACGTCGGAGTACTTGGCCGATACTGGAAGAGCAGCCAAAGACACAGCTGCC
GGAGGAGCACAGAGGACATCAGAGTATGCGGCGGAGACAGGGAGAGCGGCTGTAGAGAAGAGCCAGGGCGTGGCACAGGCAGCGAAAGAGTACGCTGTGA
AGGCGAAAGAATATACTGTGGAGAAGGCCGTTGCTGCAAAGGACGTGACTATCGAAGGGAGCAAGCAGGCTGTTCACTATGTGGGGGAGGTGGCAGAGGA
TGTGAGGGAGAGAGCTGCTGCCGCTGGGTGGACAGCGGCACACTACACTACGGAAAAGACTGTCGAAGGGACGAAGGCAGCTGCCAGAGCCGTTGTCGGA
GCTGCGGAGTATGCAGGGCATAAAACCGCGGAACTGGCGTCTAAGCCGTTAGGTGCAGTGACGAATGCAGCGGGGCAGACTGGGGAGACGGCGGAGGAGT
ATACAGCGAGGAAGAAGGATGAATCGCAGAGAGAATTGAATACCAGGAAGGCTACCACCGAGTTCCAGGGGGGAGCAGAGACGGGAGGAAGAGGGAGTGG
CTTCACTGAGAAAACTACGCCTGAGAAATTCTCAACAGGGGAGCCAGGGACTGAGGAAGAGAGAGGCGGGATGTTGGGAGACATCAGGGAAACTATAGTG
GAGATCACCAAGAATATGGTCATCGGTTCTGACGATGCAGGAGCTGCCACCGGTACCCAGGGAGGGTTTGAAGAGACTAGCAAGACGGAGTATAGTAAGC
AGGAAAAGAAGCGGTAG
AA sequence
>Lus10002197 pacid=23158738 polypeptide=Lus10002197 locus=Lus10002197.g ID=Lus10002197.BGIv1.0 annot-version=v1.0
MMASHFESIIHESTPHDSHHLQQHSKDADNQTTKPTSGDGGGTYTFGKFEMSEGGGQEGKGSHTIDEEQLSLNEIAKLRGISQQNSAEALNAAHQRYEHS
KDKGGSQVDTQGARKGSQATNSVGQGVQRATQAVQEEGSQAAEAARGGAQRASQTVQDEGSQAAEAAHVGAQRASQTMQEKAYQARDIAAEKGTQAKECV
MQGARRTSQYAGEKAAQAREAAAQGAHKTSDYLTETGRATKDTVAEKAAQAKDNVAEGAQRTSGYMAEQGRAAKDTVAGGAQRTSEYLADTGRAAKDTAA
GGAQRTSEYAAETGRAAVEKSQGVAQAAKEYAVKAKEYTVEKAVAAKDVTIEGSKQAVHYVGEVAEDVRERAAAAGWTAAHYTTEKTVEGTKAAARAVVG
AAEYAGHKTAELASKPLGAVTNAAGQTGETAEEYTARKKDESQRELNTRKATTEFQGGAETGGRGSGFTEKTTPEKFSTGEPGTEEERGGMLGDIRETIV
EITKNMVIGSDDAGAATGTQGGFEETSKTEYSKQEKKR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G42560 late embryogenesis abundant do... Lus10002197
[exp]
0 1
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10042506
[exp]
1.0 0.9956
AT1G54215 proline-rich family protein (.... Lus10037669
[exp]
3.2 0.9926
AT1G76420 NAC NAC368, CUC3, A... CUP SHAPED COTYLEDON3, Arabido... Lus10013205
[exp]
5.2 0.9909
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Lus10018717
[exp]
6.7 0.9889
AT3G26120 TEL1 terminal EAR1-like 1 (.1) Lus10036953
[exp]
9.5 0.9823
AT2G02540 ZF_HD ATHB21, ZFHD4, ... ZINC FINGER HOMEODOMAIN 3, ZIN... Lus10010694
[exp]
9.9 0.9861
AT5G65005 Polynucleotidyl transferase, r... Lus10041342
[exp]
10.0 0.9681
AT1G31310 Trihelix hydroxyproline-rich glycoprote... Lus10040629
[exp]
11.8 0.9833
AT3G19500 bHLH bHLH113 basic helix-loop-helix (bHLH) ... Lus10013874
[exp]
12.8 0.9830
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10014528
[exp]
14.3 0.9841

Lus10002197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.