Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42570 482 / 1e-171 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 450 / 6e-159 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 444 / 2e-156 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 424 / 3e-148 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT1G78710 363 / 5e-125 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT3G14850 361 / 5e-124 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G30900 340 / 1e-115 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G58600 326 / 9e-110 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 310 / 2e-103 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT3G54260 272 / 6e-89 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033617 [exp] 535 / 0 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10000988 [exp] 426 / 2e-149 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 424 / 1e-148 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000466 [exp] 408 / 6e-145 AT2G31110 291 / 4e-101 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10015309 [exp] 400 / 3e-139 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10024176 [exp] 333 / 3e-112 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039559 [exp] 322 / 1e-108 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 321 / 1e-107 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10019774 [exp] 318 / 8e-107 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118500 [exp] 522 / 0 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.019G090200 [exp] 519 / 0 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 445 / 4e-157 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 429 / 6e-151 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 381 / 8e-132 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 379 / 5e-131 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 369 / 2e-127 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 370 / 3e-127 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 358 / 8e-123 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.004G135600 [exp] 343 / 7e-117 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10002198 pacid=23158744 polypeptide=Lus10002198 locus=Lus10002198.g ID=Lus10002198.BGIv1.0 annot-version=v1.0 ATGGGTTTCTTCACATTATTTGTTCTTGCATTCCTATTATTAGCAGAAACAAGTAGCAGCAGCAGTCTAAACAACAACAGCAGTAGGAGAGAAACATTGG GAGTGAGTAAATGCAATTGGTTCCGAGGGAAATGGGTTTACGATCCTTCATACCCACTCTACGACTCTGCCAAATGTCCCTTCATGGATCCTGAATTTGA CTGCTTCAAGTTCGGACGCCCTGATAAGAATTATCTCAAGTACAGGTGGCAGCCCTTCGCATGCAATCTCCCCAGATTTAATGGATTGAATTTGCTGGAG AAATGGAGAGGCAAGAAGATAATGTTCGTCGGAGATTCACTGAGCTTGAACCAGTTTCTGTCTATGGCTTGCATGATTCATTCTTGGGTCCCTAATTCCA GATACTCTTTCCTCAGAGCTGACGGCCTCGCTTCCCTTACTTTTCTGGACTATGGAGTGAAGATAATGCTGTACAGAACTCAATACTTGGTGGACATCGT GAACGACAAGAAATACGGGCGAATCCTGAAGCTGGATTCGATGGCCGGTGATGGCAATGCCTGGCAGGGAATGGACGTGTTAGTGTTCAACTCCTGGCAC TGGTGGACTCACACTGGCAGCACTCAGCTGTGGGATTACATCCAAGACGGCAACAAAATGTACAAAGACATGAACAGGCTCATTGCATTCTACAAGGGCA TGACAACTTGGGGTAGATGGGTCAACCGAAATGTCGATCCTTCCAAGACCAAAGTCTACTTCCAGGACATCTCCCCTACTCATTATGAGGGAAGGGAGTG GAACCAGCCAACTGAGTCATGTTTGAAGCAGACTCAGCCATTCATGGGAAGCAAGTACCCTGCGGGGATGCCTATGGCGTGGACAGTTGTGAACAAGGTG TTGAGCAGGGTCAAGAAGCCAGTTTACCTTCTGGACATCACTGGTCTTTCACTATACAGGAAGGATGCTCATCCAGGTCAATATAGTAGCATCAACGGTG GTGATGACTGCAGCCATTGGTGCCTCCCTGGACTCCCTGATACCTGGAACCTCCTTCTCTACTCTGCTTCCATCACTAGTTAA
AA sequence Show only first row Show all	>Lus10002198 pacid=23158744 polypeptide=Lus10002198 locus=Lus10002198.g ID=Lus10002198.BGIv1.0 annot-version=v1.0 MGFFTLFVLAFLLLAETSSSSSLNNNSSRRETLGVSKCNWFRGKWVYDPSYPLYDSAKCPFMDPEFDCFKFGRPDKNYLKYRWQPFACNLPRFNGLNLLE KWRGKKIMFVGDSLSLNQFLSMACMIHSWVPNSRYSFLRADGLASLTFLDYGVKIMLYRTQYLVDIVNDKKYGRILKLDSMAGDGNAWQGMDVLVFNSWH WWTHTGSTQLWDYIQDGNKMYKDMNRLIAFYKGMTTWGRWVNRNVDPSKTKVYFQDISPTHYEGREWNQPTESCLKQTQPFMGSKYPAGMPMAWTVVNKV LSRVKKPVYLLDITGLSLYRKDAHPGQYSSINGGDDCSHWCLPGLPDTWNLLLYSASITS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10002198 [exp]	0	1
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	1.4	0.9690
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	4.2	0.9500
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	8.2	0.9271
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10029520 [exp]	8.4	0.9083
AT4G31250			Leucine-rich repeat protein ki...		Lus10020183 [exp]	8.5	0.8707
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	11.5	0.8759
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	11.5	0.8956
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	12.0	0.9286
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	12.2	0.9261
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	12.4	0.9219

Compare expression of checked genes

Lus10002198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.