Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 361 / 2e-124 SAG12 senescence-associated gene 12 (.1) AT5G50260 357 / 1e-122 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 353 / 3e-121 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT2G27420 347 / 6e-119 Cysteine proteinases superfamily protein (.1) AT2G34080 338 / 1e-115 Cysteine proteinases superfamily protein (.1) AT3G49340 338 / 2e-115 Cysteine proteinases superfamily protein (.1) AT5G43060 339 / 3e-114 Granulin repeat cysteine protease family protein (.1) AT1G29090 335 / 4e-114 Cysteine proteinases superfamily protein (.1) AT3G19390 338 / 5e-114 Granulin repeat cysteine protease family protein (.1) AT3G48350 335 / 7e-114 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029799 [exp] 468 / 7e-167 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10020723 [exp] 464 / 3e-165 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10026362 [exp] 463 / 7e-165 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10020722 [exp] 463 / 1e-164 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 462 / 1e-164 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 462 / 2e-164 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 462 / 2e-164 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10042295 [exp] 462 / 3e-164 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10003275 [exp] 461 / 4e-164 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G126100 [exp] 491 / 1e-175 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 482 / 1e-172 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 475 / 1e-169 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 469 / 3e-167 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 445 / 2e-157 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 444 / 4e-157 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 435 / 2e-153 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 432 / 2e-152 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 432 / 3e-152 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 432 / 3e-152 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10002199 pacid=23158726 polypeptide=Lus10002199 locus=Lus10002199.g ID=Lus10002199.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCACTGAAACCTTCAGTTCTGGCAGCAGTCCTCTTCATCATAATAGGAATATGGGTGGCCAACGCCAGGGATCTCCATAAGGACTCACAAT CCAACATGGTCCAAAGACACCAGCAATGGATGAAGCTACATGGAAAATCATACAGCCATGTTGCAGAGAAGAAAAAACGATTCAACATCTTTAAGAACAA CGTCGCATTCATTGAATCGTTCAACGCAGCAGGCAACGAGTCATACAAGCTAGCAATCAACGAGTTTGCGGACCAGACAGTCGAAGAGTTCAAGGCATTG TATAACGGTCTGGTTAGAAAAAATCACTTCAACCATGAGTCCACACCATTCAAGTACGAAAATGTGACAGATGTCCCGTCTACAATGGACTGGAGGACCA AAGGAGCAGTGACTCCTGTCAAGGACCAAGGTCAATGCGGATCCTGCTGGGCATTCTCTGCGATAGGAGCCACCGAAGGGATCAACCAGCTTACCACAGG GAAGCTAGTCTCCCTCTCGGAGCAAGAGCTCGTTGACTGCGACAGGAAAGGAGTTGACCAAGGCTGCAATGGAGGGGAGATGGAGAATGCTTTCGAGTTC ATAATTAACAACCACGGCATCACCTCCGAGTCAAATTACCCTTACCAGGCAATTGATGGAACTTGTAATGCCAATAAGGAAGGTTCACACATTGCCAAAA TTACAGGATACCAAAAGGTCCCAGCCAACAGCGAGGCAGCATTGCTCAAGGCTGTGGCTAACCAGCCGATTTCAGTGTCAGTGGATGCAGGGGATGGTAA GTTTATGTTCTATTCCAGTGGGGTGTTTACAGGTGATTGTGGGACTAACTTGGACCATGGAGTTACTGCTGTTGGGTATGGTCAAACAAAGAATGGCAAC AAATACTGGCTCGTGAAGAATTCATGGGGTACTAACTGGGGAGAGGGAGGTTACATCAGGATGCTCAGAGACGTTGATGCTAAGGAAGGTCTCTGCGGGA TTGCAATGGACTCATCTTATCCAATTGCCTAA
AA sequence Show only first row Show all	>Lus10002199 pacid=23158726 polypeptide=Lus10002199 locus=Lus10002199.g ID=Lus10002199.BGIv1.0 annot-version=v1.0 MAASLKPSVLAAVLFIIIGIWVANARDLHKDSQSNMVQRHQQWMKLHGKSYSHVAEKKKRFNIFKNNVAFIESFNAAGNESYKLAINEFADQTVEEFKAL YNGLVRKNHFNHESTPFKYENVTDVPSTMDWRTKGAVTPVKDQGQCGSCWAFSAIGATEGINQLTTGKLVSLSEQELVDCDRKGVDQGCNGGEMENAFEF IINNHGITSESNYPYQAIDGTCNANKEGSHIAKITGYQKVPANSEAALLKAVANQPISVSVDAGDGKFMFYSSGVFTGDCGTNLDHGVTAVGYGQTKNGN KYWLVKNSWGTNWGEGGYIRMLRDVDAKEGLCGIAMDSSYPIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	0	1
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	2.2	0.9489
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	4.0	0.9477
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	7.1	0.9429
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	9.6	0.9396
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	12.0	0.9158
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10028212 [exp]	12.8	0.9125
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	15.5	0.9197
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10042789 [exp]	15.5	0.9139
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	17.8	0.9186
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10039645 [exp]	17.9	0.8603

Compare expression of checked genes

Lus10002199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.