Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 81 / 6e-17 MATE efflux family protein (.1) AT1G15150 80 / 8e-17 MATE efflux family protein (.1) AT1G71140 80 / 1e-16 MATE efflux family protein (.1) AT2G04100 80 / 1e-16 MATE efflux family protein (.1) AT2G04090 77 / 8e-16 MATE efflux family protein (.1) AT1G15160 74 / 9e-15 MATE efflux family protein (.1) AT1G15180 74 / 1e-14 MATE efflux family protein (.1.2) AT2G04080 73 / 3e-14 MATE efflux family protein (.1) AT1G64820 72 / 5e-14 MATE efflux family protein (.1) AT1G73700 71 / 1e-13 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000619 [exp] 152 / 4e-42 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 87 / 5e-19 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 83 / 1e-17 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 83 / 2e-17 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 81 / 7e-17 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 81 / 8e-17 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10009140 [exp] 75 / 8e-15 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 74 / 1e-14 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10028504 [exp] 73 / 2e-14 AT1G64820 556 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116900 [exp] 96 / 2e-22 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 85 / 2e-18 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 82 / 2e-17 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 82 / 2e-17 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120400 [exp] 77 / 7e-16 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.017G120500 [exp] 77 / 8e-16 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.019G075800 [exp] 76 / 3e-15 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.004G094900 [exp] 72 / 7e-14 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.004G094800 [exp] 71 / 8e-14 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.006G171240 [exp] 69 / 5e-13 AT5G52450 486 / 3e-169 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10002200 pacid=23158723 polypeptide=Lus10002200 locus=Lus10002200.g ID=Lus10002200.BGIv1.0 annot-version=v1.0 ATGAGGTTCGGTGGTTCGGACTCTCAACCCTTGGAAGAAGAAGAAGAGGAGGAGGAAACACTCCCCCTCAAACAGGGTATTGGTAGTAATGAATCCGATG AGATCAATAGTCAAGAAACCAGCAAGAAGAGCAAAGGACAGCGGAACGATTTATCGTCTGAAGTGAAACAAGTGAGTTCATTGGCCGCTCCTCTAATCAC CATCAATATGTCACAGTACTTCCTCCAAGTAATCTCGCTAACAATGGTGGGCCACCTTGGAGATCAGCTTGCTCTTTCCAGCTCCGCTATCGCCATCTCT TTCTCCGTAGTCACCGGCTTCAGCCTCACCGAATCAACCATGGCAACTCTCTATACAATGCCACAAGGAATAGGAGCAGCAACAAGCACAAGAGTTTCCA ATGAATTGGGAGCAGGGAACCCCAGAGCAGCCTGTGTAGCAGTGAGCGCCTCGGTGTTCCTCTCATGTGCTCAAGCACTAACGGTCAGCTCAGTGATGTT TGGATTCAGACATTTATTAGGCCATATCTTCAGCAGTGATAAGCAAGTGGTGTATTATGTGACAACAATAGCTTTGATGTGTATCAGTGATACTAGACAG CGAGTGAGTGACCCTTTCAGGAGTTGCGAGGGGATGTGGATGGCAGAACTTGGGTACTTATGTCAGCCTGGCATCCTATTACATCTGTGGAGTTCCTCTC TTAGCAGTATTGGTGTTCTGGTTGCAATTGAGAGGGCCAGGACTCAGGGCCGGGATTCAAGTTGGTTCATTTTTGTAGAACATTTTACTGATTATCATAA CATGTCGAACGGATTGGGAACGCGAGGTCCATCATCTCATATACCTAGCTAA
AA sequence Show only first row Show all	>Lus10002200 pacid=23158723 polypeptide=Lus10002200 locus=Lus10002200.g ID=Lus10002200.BGIv1.0 annot-version=v1.0 MRFGGSDSQPLEEEEEEEETLPLKQGIGSNESDEINSQETSKKSKGQRNDLSSEVKQVSSLAAPLITINMSQYFLQVISLTMVGHLGDQLALSSSAIAIS FSVVTGFSLTESTMATLYTMPQGIGAATSTRVSNELGAGNPRAACVAVSASVFLSCAQALTVSSVMFGFRHLLGHIFSSDKQVVYYVTTIALMCISDTRQ RVSDPFRSCEGMWMAELGYLCQPGILLHLWSSSLSSIGVLVAIERARTQGRDSSWFIFVEHFTDYHNMSNGLGTRGPSSHIPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15170			MATE efflux family protein (.1...		Lus10002200 [exp]	0	1
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	3.0	0.7855
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	5.5	0.7107
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035625 [exp]	6.6	0.7494
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003264 [exp]	8.0	0.6698
					Lus10010582 [exp]	11.2	0.6941
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10041605 [exp]	16.0	0.6980
AT2G25270			unknown protein		Lus10014341 [exp]	16.6	0.6735
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023452 [exp]	22.2	0.6313
AT4G35160			O-methyltransferase family pro...		Lus10032304 [exp]	25.4	0.6053
AT5G42340		PUB15	Plant U-Box 15 (.1)		Lus10012260 [exp]	28.0	0.6729

Compare expression of checked genes

Lus10002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.