Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14520 336 / 1e-111 pescadillo-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000618 [exp] 573 / 0 AT5G14520 787 / 0.0 pescadillo-related (.1) Lus10001361 [exp] 174 / 3e-52 AT5G14520 312 / 3e-103 pescadillo-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G121400 [exp] 419 / 7e-144 AT5G14520 799 / 0.0 pescadillo-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10002201 pacid=23158733 polypeptide=Lus10002201 locus=Lus10002201.g ID=Lus10002201.BGIv1.0 annot-version=v1.0 ATGAATAGAAACTCTAAGCATATTATTGAAGAGCTCAAAGATTCCGTTTCCTCTAAACTAGAGCAAACTGAAGGCCAAAAAGAGGGTACTCAATTTGAAG AGTCTGAGTTAAGACTTTCCCAACTTCACCATCAACTCCCATCAAATGAACCTGGAGCATTGATGCACCTCATTGAAGAAGACACCGAATATGATGATGA TGGTCCAGATACAAAGGAGTGTAGGAAGCTGTTCAAGAATATGAAGTTCTATCTAAGCCGTGAGGTAGAGGACTTCTCACTTCCTTGGCAAGTTCCTCGG GAGTCTTTGCTTTTTGTCATTGCTGCTTTTGGTGGTGTTGTTTCATGGGAAGGGGACGGAGCTCCGTTCACTAAAGACGACCAAAGCATTACACATCAGA TCGTTGATAGGCCAACTCAAGATCACAAGTTTTTCTCCCGGGAATATATTCAACCTCAGTGGGTTTACGATTGTGTAAATGCTAGGATCATACTACCAAC TGATATCTACATGGCGGGAAGGGCTCCTCCTCCGCATCTCTCTCCTTTTGTCGATAACGAAGTAGAAGGGTATATCCCTGATTACGCGGAGACCATCAAA CGTTTACAGGCTGCTGCCAAGAATGAAATCCTCCCCATGCCAGGTGTGGGTAAGAATGACTTGGAGGATCCTCAGCTGTTGTTAGCTGAAGGATATCTTA GTCGAACTGAGGCTATTGAATCTGCCGAGAGAAAAGAACAGTTGGCAACTTTGGAGAAGCAATATCATGAAGAGCTGAAGATTGAACTACAAGGCAGATC TCTTTCGAAGAAAACTGAGGACAGCTCTGTTGAGGGCGCCGAGGCCAAAGTAGAGTCTTGTCCTACCATTGAACAGATTGCTAAAGACACTGATACCATG TCGGGTATGATGATGTCAAGAAAGAAAAGAGGCCTTTCTAAAGCAATTGAGATTGGAGAAGAACGAAAGAAAGCCAAAGTCAATAAGCTCAAGGAGCGGA AGAAGAAACTGGCTGAGAGTTCTTCCTAG
AA sequence Show only first row Show all	>Lus10002201 pacid=23158733 polypeptide=Lus10002201 locus=Lus10002201.g ID=Lus10002201.BGIv1.0 annot-version=v1.0 MNRNSKHIIEELKDSVSSKLEQTEGQKEGTQFEESELRLSQLHHQLPSNEPGALMHLIEEDTEYDDDGPDTKECRKLFKNMKFYLSREVEDFSLPWQVPR ESLLFVIAAFGGVVSWEGDGAPFTKDDQSITHQIVDRPTQDHKFFSREYIQPQWVYDCVNARIILPTDIYMAGRAPPPHLSPFVDNEVEGYIPDYAETIK RLQAAAKNEILPMPGVGKNDLEDPQLLLAEGYLSRTEAIESAERKEQLATLEKQYHEELKIELQGRSLSKKTEDSSVEGAEAKVESCPTIEQIAKDTDTM SGMMMSRKKRGLSKAIEIGEERKKAKVNKLKERKKKLAESSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	0	1
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	2.2	0.9126
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	2.8	0.8759
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10011178 [exp]	3.5	0.8944
AT4G11160			Translation initiation factor ...		Lus10033933 [exp]	4.2	0.8746
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	5.7	0.9059
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	6.5	0.8806
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	6.7	0.8716
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	8.1	0.8964
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10040577 [exp]	9.7	0.8127
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018881 [exp]	11.5	0.8551

Compare expression of checked genes

Lus10002201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.