Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51750 43 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003381 [exp] 74 / 2e-16 AT4G17140 52 / 3e-07 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103600 [exp] 60 / 6e-12 AT3G51750 40 / 8e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002202 pacid=23180540 polypeptide=Lus10002202 locus=Lus10002202.g ID=Lus10002202.BGIv1.0 annot-version=v1.0 ATGGAAGACTGTGCAATGGGAACTCCAGATATCTACCCAACCGACGACGTACTACAAGATCGCCGCCGTGAGGAAGAAGAGCAACATACCCCGGCTGCGG TGGCGGCGGATGATCCAGTAGTGGTAGAGAGCAAAGATGAAGAGAAGAAAGGCGGGATCTTGAACAATCTCCTTGCCAACTTGGTTGCTCCTCTCAGCCC AAGAGCCTCATCGCCGGAAGAAGATAAGGATCATCGCCGAGGAGCTTTCTCGAAGGATGCTACGTCACCGCCGCCGGCAGAGAAGGAAAGCGGAAATGGC GGGATAATTGAGAACATTGTTTCCCACTTGCCCAAATCTCTCCCAGAAGATGTTGATCCGAGCAACGATGAGGCGTCAATTCTGATCCACGCCATTGTTC ACGATTGA
AA sequence Show only first row Show all	>Lus10002202 pacid=23180540 polypeptide=Lus10002202 locus=Lus10002202.g ID=Lus10002202.BGIv1.0 annot-version=v1.0 MEDCAMGTPDIYPTDDVLQDRRREEEEQHTPAAVAADDPVVVESKDEEKKGGILNNLLANLVAPLSPRASSPEEDKDHRRGAFSKDATSPPPAEKESGNG GIIENIVSHLPKSLPEDVDPSNDEASILIHAIVHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51750			unknown protein		Lus10002202 [exp]	0	1
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10020309 [exp]	6.8	0.7086
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	13.1	0.6545
AT5G02440			unknown protein		Lus10023770 [exp]	18.9	0.6640
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	19.1	0.6443
AT3G14250			RING/U-box superfamily protein...		Lus10000412 [exp]	23.5	0.5908
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	25.9	0.5993
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	28.4	0.6451
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	32.2	0.6391
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	35.0	0.5869
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10025724 [exp]	37.0	0.5702

Compare expression of checked genes

Lus10002202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.