Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01580 237 / 5e-79 OSH1 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT1G07080 199 / 2e-63 Thioredoxin superfamily protein (.1) AT4G12900 169 / 2e-52 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12890 167 / 2e-51 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12870 155 / 8e-47 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12960 153 / 6e-46 GILT, AtGILT gamma-interferon-responsive lysosomal thiol reductase, Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1), Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042270 [exp] 207 / 1e-66 AT1G07080 285 / 5e-97 Thioredoxin superfamily protein (.1) Lus10026384 [exp] 206 / 3e-66 AT1G07080 281 / 1e-95 Thioredoxin superfamily protein (.1) Lus10012503 [exp] 163 / 6e-50 AT1G07080 171 / 1e-52 Thioredoxin superfamily protein (.1) Lus10022669 [exp] 161 / 3e-49 AT1G07080 170 / 2e-52 Thioredoxin superfamily protein (.1) Lus10022670 [exp] 170 / 4e-49 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 160 / 1e-45 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121900 [exp] 285 / 8e-98 AT5G01580 263 / 3e-89 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Potri.009G076200 [exp] 201 / 1e-64 AT1G07080 278 / 3e-94 Thioredoxin superfamily protein (.1) Potri.006G103000 [exp] 193 / 3e-61 AT1G07080 196 / 3e-62 Thioredoxin superfamily protein (.1) Potri.001G281004 [exp] 189 / 5e-60 AT1G07080 266 / 8e-90 Thioredoxin superfamily protein (.1) Potri.016G122200 [exp] 187 / 4e-59 AT1G07080 204 / 3e-65 Thioredoxin superfamily protein (.1) Potri.012G107300 [exp] 187 / 1e-58 AT1G07080 205 / 1e-65 Thioredoxin superfamily protein (.1) Potri.012G107600 [exp] 186 / 1e-58 AT1G07080 204 / 2e-65 Thioredoxin superfamily protein (.1) Potri.016G122000 [exp] 180 / 1e-56 AT1G07080 185 / 3e-58 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF03227 [flax] [poplar] GILT Gamma interferon inducible lysosomal thiol reductase (GILT)
Representative CDS sequence Show only first row Show all	>Lus10002203 pacid=23180533 polypeptide=Lus10002203 locus=Lus10002203.g ID=Lus10002203.BGIv1.0 annot-version=v1.0 ATGGATTCTCGTTCCTTCCTCTTAGCTTGTACCCTGACAATGGCCGCCATGGCCATTGCTTTACCTTCATCTTCTTCTGAAAACATCACTCTGTCTCTTT ACTACGAAACCTTATGTCCGTACTGTGCAGATTTCATAGTGAACCATCTCCCCAAGGTGTTCGACAACGGGCTGATCTCGTTTCTCAATCTCAGGCTGAT TCCTTGGGGCAATGCTCTTCTTCAACCTGACGGAACCTTCCTCTGCCAGCATGGTCCCAACGAATGCGTCCTGAATTCCATGGATGCCTGCACCATTGCA ATTTACCCTGATCCAATTAGACATTTCAATTTCGTACGCTGCATCGAGATTCTTGTGATGGAGAACAAGCTAAACGACTGGATCGGTTGCTTTCAGGCCA GTGGGTTGAGTGATGCGCCGGTTATTGATTGCTACACCAATGGCCTCGGGAAAGAGCTCGAGCGGCAACATGCTAGTGAAACTGGTGAGCTGAACCCACA ACACAGGTTTGTGCCGTGGGTCGTTGTCAATGGCCAGCCACTCCAAGAGGATTTCAGCAACTTCCAAAGCTACATCTGCAAGGCTTACAGAGAAAGGTTC GCTGATCAGGTGTTACCAAAAGTTTGCAATTCACTTCCAATGTCGAATTATTCGTTGAACGATGTCGAAGATTCGGTAAGCCAAAGTCGAGTTTGCCATC CTCAAACAAACAGATGA
AA sequence Show only first row Show all	>Lus10002203 pacid=23180533 polypeptide=Lus10002203 locus=Lus10002203.g ID=Lus10002203.BGIv1.0 annot-version=v1.0 MDSRSFLLACTLTMAAMAIALPSSSSENITLSLYYETLCPYCADFIVNHLPKVFDNGLISFLNLRLIPWGNALLQPDGTFLCQHGPNECVLNSMDACTIA IYPDPIRHFNFVRCIEILVMENKLNDWIGCFQASGLSDAPVIDCYTNGLGKELERQHASETGELNPQHRFVPWVVVNGQPLQEDFSNFQSYICKAYRERF ADQVLPKVCNSLPMSNYSLNDVEDSVSQSRVCHPQTNR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	0	1
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	2.0	0.7485
AT1G31440			SH3 domain-containing protein ...		Lus10034755 [exp]	6.0	0.6724
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	11.0	0.6540
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10043190 [exp]	12.1	0.6419
AT5G18910			Protein kinase superfamily pro...		Lus10012776 [exp]	13.3	0.6301
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	17.3	0.6997
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Lus10008013 [exp]	20.7	0.5372
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	23.4	0.6230
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	25.9	0.6663
AT1G27170			transmembrane receptors;ATP bi...		Lus10014582 [exp]	35.1	0.5849

Compare expression of checked genes

Lus10002203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.