Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 1089 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 799 / 0 EOL2 ETO1-like 2 (.1.2) AT4G02680 720 / 0 EOL1 ETO1-like 1 (.1) AT3G04240 48 / 4e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012238 [exp] 1502 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022660 [exp] 1073 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 875 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 872 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 761 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10012472 [exp] 226 / 5e-69 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 182 / 3e-49 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 157 / 1e-44 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010041 [exp] 144 / 2e-40 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123800 [exp] 1106 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 1074 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 987 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.009G075300 [exp] 976 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.002G048300 [exp] 754 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.005G214400 [exp] 741 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.019G025600 [exp] 47 / 4e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 45 / 0.0002 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10002206 pacid=23180531 polypeptide=Lus10002206 locus=Lus10002206.g ID=Lus10002206.BGIv1.0 annot-version=v1.0 ATGGATTGTTGTGGGAGAAATATCGAATGCCCTAAGTCATGCTTGATTTTTGGTTACGATCCTGAATGTGCAAATGATCCTTGCAGCTGTTCTTCGCGAT CAGATAACGATGATGTTGAATTGATCGGAGAGGAATGTTCGACTTCCTCCGACGAAGAAGCAGATATTTCGTTCTGCATCGGCGAAGAAGAGATTCATTG CAATAGGTACAAGATCGCATCGATTTCCAGGCCGTTTAAGGCAATGCTGTATGGAGATTTCACGGAATCAAGAAGGGGGAAGATATACTTCTCCATGAAT TCGATATCCGCGGAAGGAATGAAGGCAGTAGAAAGTTTCAGCAGGACGAAGAAGTTAGCCATTGTTGATAATCTACCTTTACTTCTGGAGATTCTATCAT TCGCGAACCGATTCTGCTGCGGCACATTGAAAGCCACTTGCGATTCTCGATTGGCTTCCTTAGTCTTGGACATGGACATAGCATTGTCCATTATCGATTA CGGATTGGAAGAGACGGCTTATCTTACAGTAGCAGCTTGTTTACAGGTGTTTCTTCGAGAGCTTCCGAGCTCGATGAACCATCATTACATTAGAAAACTG TTTTGTACTTCAGAAGGTAAGGAAAGATTGAATCTTGCTGGACACGCTTCGTTTCTGCTGTATTACTTTCTGAGTCAGATTTCGATGGATGACGATATGA AATCGAACGCTACGGTCATGCTACTCGAGCGGCTGGGAGAATTTTCGGTTGAAGATTGGCAGAAGCAGATCGCTTATCATCAATTGGGAGTCGTGATGCT CGAGAGGAACGAGTTCAAAGACGCTCAGAAATGGTTCGACTCCGCGGTTGAGTCCGGTCACATTTATTCTTCAGTAGGTTCCGCGAGGGCCAAGTACAAG CGGGGACATAAGTATCTAGCGTACAAGGCGATGAACTCGTTGATTAATTTGGATTCAGGTTACAAACCGGCCGGGTGGATGTATCAGGAGAGGGCAATGT ACTGCAGCGAGAAAGAGAAGCTGGTAGATTTAGAAGTAGCGACCCAAATGGATCCGACTCTTACATTCCCTTACAAGTATAGAGCCGTCTCGTTGGTAGA AGACGATAAACTCCATGCTGCAATTTCTGAACTTGGGAAAGTGATTGGCTTTAATGTGTCGACTGATTTCCTCGAGCTGCGGGCTTGGATTTCAATCGGT TTGCGTGATTACGAAGGTGCTGTTAAGGATATCAGGGCGCTCTTGGCTTTGGAACCAAATTACTACACGGTGCATAACGGGAAAGTGAAAGGTGATCAGT TGCTGGAACTTCTTAGCCCTCTTGTTCATCAGTGGGATGATGCTGGTTGTTGGATGCAACTCTATGATCGATGGTCCGCTGTCGACGACATTGGATCGCT AGCTTTAGTACACAACATGTTGGCGTATGCTCCGGAGAAGAGCATCTATTGGTTCCGACAATCTCTTCTGCTCTTACGGTTGAATTATCAGAAGGCTGCA ATGCGGAGTTTAAGGTTGGCTAGGAACTTTTCTCCTACGGAACATGAAAGGCTCGTCTACGAAGGTTGGATTCTTTATGACACGGGCAATCGAGAAGAAG CGCTGGCGAAAGCTGAGAAGTCGGTTTCAATTCAAAGGTCATTCGAAGCGTTTTTCCTGAAAGCGTATATATTAGCAGACTCGAATCCTTATCCCAACTC GTCAATGGATGTTATTCAAATTCTGGAAGAAGCTCGAAGTTGCTGCCCGTCGGATAGTCTTCGTAAAGGACAGGCACTGAATAACCTGGGCAGTGTTTAT GTCGACTGCGGGAATCTAGACCGAGCTACCGAATGCTACACCGAAGCGATCAATATCATGCACACAAGAGCTCACCAAGGTCTGGCGCGAGTTTATCATC TGAAAGACGATCGAAAAGCTGCCTATGATGAGATGACAAAGTTGATCGAGAAAGCCGGGAACAATGCCTCGGCTTACGAGAAACGGTCCGAATATTGCGA TCAGGATATGGCAAAGAGCGATCTTTCCATGGCGACGCAGCTTGATCCGTTGCGAACATATCCTTACCGATACAGGGCAGCCGTTCTGATGGATAACCAC AGGGAAGGTGAAGCAATAGCCGAGCTTACGAGGGCGATAGCGTTCAAGCCGGACTTGCAATTGTTGCATCTTCGAGCAGCTTTCTACGACTCAATGGGGG ATTTTGTCAACACTTTCCGGGACTGTCGAGCTGCATTGTGTCTAGATCCTGGGTATGGCGATGTGATGGAACTGTACAACAAAGCAGCCGCGAAAGCTTA A
AA sequence Show only first row Show all	>Lus10002206 pacid=23180531 polypeptide=Lus10002206 locus=Lus10002206.g ID=Lus10002206.BGIv1.0 annot-version=v1.0 MDCCGRNIECPKSCLIFGYDPECANDPCSCSSRSDNDDVELIGEECSTSSDEEADISFCIGEEEIHCNRYKIASISRPFKAMLYGDFTESRRGKIYFSMN SISAEGMKAVESFSRTKKLAIVDNLPLLLEILSFANRFCCGTLKATCDSRLASLVLDMDIALSIIDYGLEETAYLTVAACLQVFLRELPSSMNHHYIRKL FCTSEGKERLNLAGHASFLLYYFLSQISMDDDMKSNATVMLLERLGEFSVEDWQKQIAYHQLGVVMLERNEFKDAQKWFDSAVESGHIYSSVGSARAKYK RGHKYLAYKAMNSLINLDSGYKPAGWMYQERAMYCSEKEKLVDLEVATQMDPTLTFPYKYRAVSLVEDDKLHAAISELGKVIGFNVSTDFLELRAWISIG LRDYEGAVKDIRALLALEPNYYTVHNGKVKGDQLLELLSPLVHQWDDAGCWMQLYDRWSAVDDIGSLALVHNMLAYAPEKSIYWFRQSLLLLRLNYQKAA MRSLRLARNFSPTEHERLVYEGWILYDTGNREEALAKAEKSVSIQRSFEAFFLKAYILADSNPYPNSSMDVIQILEEARSCCPSDSLRKGQALNNLGSVY VDCGNLDRATECYTEAINIMHTRAHQGLARVYHLKDDRKAAYDEMTKLIEKAGNNASAYEKRSEYCDQDMAKSDLSMATQLDPLRTYPYRYRAAVLMDNH REGEAIAELTRAIAFKPDLQLLHLRAAFYDSMGDFVNTFRDCRAALCLDPGYGDVMELYNKAAAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10002206 [exp]	0	1
AT4G22320			unknown protein		Lus10021308 [exp]	6.9	0.7729
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	8.9	0.8095
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10033913 [exp]	11.5	0.7586
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	13.9	0.7764
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10010629 [exp]	15.5	0.7554
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006784 [exp]	24.6	0.7406
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	38.8	0.7549
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	41.6	0.7442
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	44.3	0.7431
AT1G29640			Protein of unknown function, D...		Lus10011993 [exp]	50.8	0.6984

Compare expression of checked genes

Lus10002206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.