Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51780 149 / 4e-43 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G52060 79 / 3e-16 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 71 / 8e-14 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 63 / 4e-11 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003393 [exp] 360 / 1e-125 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 221 / 3e-70 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10005051 [exp] 216 / 3e-67 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027420 [exp] 81 / 5e-17 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 80 / 8e-17 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 78 / 1e-16 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10038882 [exp] 73 / 2e-14 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 71 / 9e-14 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121200 [exp] 162 / 3e-48 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G279500 [exp] 152 / 4e-44 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.009G074300 [exp] 144 / 4e-41 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.001G358200 [exp] 76 / 1e-15 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.015G135500 [exp] 75 / 5e-15 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 75 / 7e-15 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 56 / 1e-08 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10002209 pacid=23180541 polypeptide=Lus10002209 locus=Lus10002209.g ID=Lus10002209.BGIv1.0 annot-version=v1.0 ATGATGACAGGGATGGCTCATCAGAATGAGGAGGCGGAGTTGGAAGTGAGGCCTGGGGGAATGCTGGTACAAAGACGAGACGGCGATGATCGGGATCGCA CTCACGGCGGGGGTTCTACTACAAACGTAATTAATGGAGCTCGAGCTCAGCAGGAGGTCCATATCCCTGCACAATCTACTCTCGGTACTATTGTCACTCG ATTTCCTATTCTGATCTCTCTTCCGCGCTCGAATCCTGTTGTTCAATTTTCAGCGGAGTTGCGACAATTTTGGAACTCAGTCGTGTTCGGAACGATGCTA GAACTTAGTAATCTGGACTTGACTACGTTTAGATTGGAATGTCTGTCAAGTTCCATTGTCAACTTGAATCGCGAAGTTCTGTATAGATTTTGGAGGAACG CGATCTGCGAGTTGAAGAGGGTCAATGAACGGGACACAGGTCCGGAATGTGCTAGTAGGCACAAGATGTCATTCCGAGGAAAGGCAAAAGATGATGCTGA ACATGTGCACGATGCAGCCAAGGAAAGAGAGGACGGATCAACAAACCTGGATGTTAAGCAAATAGCTGAAATCTTGAAGGCAATGCAAGCTATTGATGAA GTTAGAGCCGAAGTGGATAAGCTCTCTGAAAGAGTCCATGCGCTTAAAGTTGCTGTTAACGGTGGAACGAAGGTCGCTGACCGGGAATTCGCAGTTGCAG CTGAGTTACTGATGAGGCAGTTACTGAAATTGGATACCATTGATGCCATAGGAGAAGCTAGGATTCAGCGGAAGGCTGAGGTGCTCCGAGTCCAGAAGCT GCACGATTCGTTGGACGATTTGAAGGCGAGGAATGGCAAGCCAGCGGATACAGGCTTTGTTGTCCCAACTGTGACGACCAACTGGGAAAAGTTTGACTCA GGAATGGGAAGCTTGACTCCTCCACCTCCAATGACTTCTTCAGCTACAATCACTCAGAACTGGGAAAGCTTTTGA
AA sequence Show only first row Show all	>Lus10002209 pacid=23180541 polypeptide=Lus10002209 locus=Lus10002209.g ID=Lus10002209.BGIv1.0 annot-version=v1.0 MMTGMAHQNEEAELEVRPGGMLVQRRDGDDRDRTHGGGSTTNVINGARAQQEVHIPAQSTLGTIVTRFPILISLPRSNPVVQFSAELRQFWNSVVFGTML ELSNLDLTTFRLECLSSSIVNLNREVLYRFWRNAICELKRVNERDTGPECASRHKMSFRGKAKDDAEHVHDAAKEREDGSTNLDVKQIAEILKAMQAIDE VRAEVDKLSERVHALKVAVNGGTKVADREFAVAAELLMRQLLKLDTIDAIGEARIQRKAEVLRVQKLHDSLDDLKARNGKPADTGFVVPTVTTNWEKFDS GMGSLTPPPPMTSSATITQNWESF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10002209 [exp]	0	1
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	2.8	0.9388
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	4.0	0.9346
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	4.2	0.9317
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	5.9	0.9193
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	8.0	0.9109
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10037284 [exp]	14.7	0.9156
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	15.7	0.9300
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	16.5	0.9316
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	18.2	0.9111
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	19.0	0.9280

Compare expression of checked genes

Lus10002209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.