Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80930 819 / 0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G52325 100 / 2e-24 Initiation factor eIF-4 gamma, MA3 (.1) AT5G17930 75 / 1e-13 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003392 [exp] 898 / 0 AT1G80930 491 / 1e-162 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10011226 [exp] 255 / 6e-80 AT1G80930 266 / 2e-83 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10019865 [exp] 68 / 2e-11 AT5G17930 621 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10014048 [exp] 66 / 1e-10 AT5G17930 720 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121100 [exp] 814 / 0 AT1G80930 879 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Potri.013G061400 [exp] 74 / 2e-13 AT5G17930 735 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10002210 pacid=23180530 polypeptide=Lus10002210 locus=Lus10002210.g ID=Lus10002210.BGIv1.0 annot-version=v1.0 ATGGCGAGGAAGTACAGCAGTGACTCCAGCGACGACGATGGAGACAGGCATCGTCGCAGCTCAAGGAAGGATCTAGAATTGGATTCCTCCTCGGATTCTG ATAGAAAAACGAAGATCGATAGGAAGGACGAGCGGAGGAACGAAGATCGGCGGCGTAAAGAAGTTAAAGAAAGTTCCGATGAAGAAGGGGAGTTGGTGAA GAGAGAGGACGGTGATAGACGAGGCAAGGTGAAGAGCAGCAGCACGCGGGATGGTAACAAGATTGCTGATGAGGAAGGGGATAAACGAGATAGGTCGGAT AAGGATAAAAGTAGAAGTCGTAGGCATGATGATTACAGAGGCAGGGATCGGCATTCACGTAGGGATGCAGATCGAAGAGAAGATCGACACAGGGATAGGG ATTATGATGATAGGGATAGAAGGCACCGAACCAGAGATGGTGAAGGAGGGGATAAGCATAGAAGAGACCGTGATAGAGATAGTAGGCGGGATGAATCACG GAACGAGAAAGTGAAGGAGGAAGCAAAGACTGAATTGGCTGCGCCAGATGTGAACTCGATTCCTGCTGCTTGGAGCTCCGGGAAGAGTGGAGGAGTTTAC ATTCCTCCGTTTAAGTTGGCAAGGATGATGAAAGAGGTGGATGATAAGAGCAGTGTTGAGTATCAGAGACTCACTTGGGATGCCTTGAGGAAGAGTATCA ATGGGCTTGTGAACAAGGTCAATGCTGCCAATATCAAGAACATAATTCCTGAGCTGTTCTCTGAGAATTTGATAAGAGGAAGGGGTCTATTCTGCAGGTC TTGCATGAAATCCCAGATGGCATCTCCAGGGTTCACTGATGTGTTTGCTGCTTTGGCTGCTGTGGTAAATACCAAGTTCCCGGAGGTTGGTGAGCTTCTA TTGAAGAGAATAGTCTTGCAGCTCAAGAGAGCTTTCAAACGCAATGACAAGCCTCAGTTGTTAGCCGCCGTGAAATTTATAGCGCATTTGGTTAACCAGC AAGTGGCTCATGAGATTATCGCTCTGGAGCTCCTTGCTGTGTTGCTCGCCAATCCTACTGATGATAGTGTGGAGGTAGCTGTGGGGTTCGTGATAGAAAG TGGCTCGATGCTTCAGGACTTGTCACCGAAAGGACTTCACGGAGCTTTTGAGAGGTTTCGTGCCATTCTACACGAAGGAGAGATAGACAAGCGTGTTCAG TTCTTGATTGAAGGTCTGTTTGCCATAAGAAAAGCAAAATTCCAGGGCTATCCTGCTGTCCGTCCAGAGTTGGATCTGGTGGAACAAGAAGAGCAAATCA CACATGAGCTATCCCTCGAGGAAACGATAGATCCAGAGATATCTCTCGGTACTCTTTCTAGGATGCGAATAAGGGATGAGACAGAGACGAATCTTATCAA CCTTCGAAGAACCATCTACTTGACTATAATGTCCAGTGTAGATTTTGAAGAAGCTGGTCACAAACTTTTGAAGATTAAGCTCGAACCAGGTCAAGAGATG GAGTTGTGCATCATGCTTCTGGAGTGCTGCAGTCAAGAGAGGACTTACCTTAGGTACTATGGTCTTTTGGGGCAGAGGTTCTGCATGATCAACAAAATCC ACCAAGAAAATTTCGAGAAGTGTTTCGTGCAACAGTACTCGATGATTCACAGGCTCGAGACAAACAAGCTAAGGAATGTAGCTAAGTTCTTCGCCCATTT GCTAGGCACAGATGCACTCCCTTGGCATGTTCTGGCCTACATACGTTTGACTGAAGAGGACACCACTTCTTCTTCTCGTATTTTTATCAAGATCCTCTTC CAGGAATTATCAGAACACCTGGGTATCCGAAACCTGAACGATCGTCTCTCGGATCCGGCAATGCAAGACTCGTTCGAGTCCATTTTCCCGAGGGACAATC CGAAGAACACGAGGTTCTCCATCAACTTCTTCACCTCTATTGGTCTCGGTGGAATTACTGAGAACCTACGAGAGTATCTGAAGAACATGCCACGGCTGAT TATGCAGCAGCAGAAGCCTGCCTCGGACTTGGACTCAGAGTCCGACTCCAAAGACAAATCAGACTCCGATTCCTCTGACTCGTCATCCGAATCAGAATCG GGAAGCTCCTCATCCGAAGAAGACAGACGTTCGAAACGGAAGAAAAGGAATGGAAGGGATGATCGAGATAGAAGACACAGTAAGAAGAGCCGGAGGGATT GA
AA sequence Show only first row Show all	>Lus10002210 pacid=23180530 polypeptide=Lus10002210 locus=Lus10002210.g ID=Lus10002210.BGIv1.0 annot-version=v1.0 MARKYSSDSSDDDGDRHRRSSRKDLELDSSSDSDRKTKIDRKDERRNEDRRRKEVKESSDEEGELVKREDGDRRGKVKSSSTRDGNKIADEEGDKRDRSD KDKSRSRRHDDYRGRDRHSRRDADRREDRHRDRDYDDRDRRHRTRDGEGGDKHRRDRDRDSRRDESRNEKVKEEAKTELAAPDVNSIPAAWSSGKSGGVY IPPFKLARMMKEVDDKSSVEYQRLTWDALRKSINGLVNKVNAANIKNIIPELFSENLIRGRGLFCRSCMKSQMASPGFTDVFAALAAVVNTKFPEVGELL LKRIVLQLKRAFKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLAVLLANPTDDSVEVAVGFVIESGSMLQDLSPKGLHGAFERFRAILHEGEIDKRVQ FLIEGLFAIRKAKFQGYPAVRPELDLVEQEEQITHELSLEETIDPEISLGTLSRMRIRDETETNLINLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEM ELCIMLLECCSQERTYLRYYGLLGQRFCMINKIHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILF QELSEHLGIRNLNDRLSDPAMQDSFESIFPRDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQQKPASDLDSESDSKDKSDSDSSDSSSESES GSSSSEEDRRSKRKKRNGRDDRDRRHSKKSRRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80930			MIF4G domain-containing protei...		Lus10002210 [exp]	0	1
AT5G67265			unknown protein		Lus10042633 [exp]	2.4	0.8940
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	4.7	0.9015
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	5.5	0.8830
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	7.0	0.8788
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	7.2	0.9044
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10026172 [exp]	11.2	0.8792
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	11.7	0.8884
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10024044 [exp]	14.7	0.8550
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10030468 [exp]	19.6	0.8181
					Lus10019815 [exp]	19.8	0.8277

Compare expression of checked genes

Lus10002210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.