Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01300 217 / 8e-67 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2) AT4G13810 153 / 1e-38 AtRLP47 receptor like protein 47 (.1.2) AT4G13920 150 / 3e-37 AtRLP50 receptor like protein 50 (.1) AT4G13820 145 / 4e-36 Leucine-rich repeat (LRR) family protein (.1) AT4G08850 144 / 1e-35 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G17230 143 / 6e-35 Leucine-rich receptor-like protein kinase family protein (.1) AT5G53890 141 / 2e-34 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT5G23400 137 / 9e-34 Leucine-rich repeat (LRR) family protein (.1) AT1G75640 139 / 1e-33 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 137 / 3e-33 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003387 [exp] 535 / 2e-177 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10003389 [exp] 533 / 1e-176 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002215 [exp] 435 / 2e-145 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10042239 [exp] 420 / 5e-133 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 415 / 4e-131 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003388 [exp] 296 / 7e-97 AT5G01300 216 / 1e-72 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2) Lus10006825 [exp] 299 / 3e-88 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10009330 [exp] 233 / 6e-66 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10000228 [exp] 196 / 1e-54 AT3G05370 231 / 3e-66 receptor like protein 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 392 / 6e-122 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 263 / 2e-75 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G120532 [exp] 254 / 2e-73 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G121000 [exp] 230 / 2e-71 AT5G01300 173 / 5e-56 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2) Potri.011G021400 [exp] 218 / 7e-60 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.001G437700 [exp] 198 / 3e-53 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 179 / 8e-47 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127101 [exp] 169 / 2e-43 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 167 / 8e-43 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.003G156200 [exp] 150 / 3e-37 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10002212 pacid=23180534 polypeptide=Lus10002212 locus=Lus10002212.g ID=Lus10002212.BGIv1.0 annot-version=v1.0 ATGGCCGACGAATTCAGAGTAGTGATTCCAGGAGTTGACCACGACGGCAAGCTACCGAGAAAGTACACCAGTGAGGGTCAAGGCGCGACCAAGAACGTGT CCCCACCGCTAGAATGGTACAACGTGCCCCAGGGGACCAAGACTTTCGCCCTCGTGGTCCAGGACATCGACGCCCCCGACCCTGCGGGCCCGCTGGTCCC GTGGACCGTGTGGGTGGTGGAGAATATTCCGGCGGCGGTGAAGCGCTTGCCGGAAGGGTTTTCCGGGCAAGGTGATGAGATCGCCGGGGAGTATGGTGTT GTGAAGGAAGGGAATAATGACGAGAAGGTCCCTGGGTGGAGGACTCCGATGTTGCCGAGCCATGGGCATCGGCTTGAGTTCAAGTTGTTTGCTCTTGATT GTGAATTGAACCTCGGTAACAAGGTGACGAAGGAGAAAGTGGAGGAGGCTGTTGAAGGGCATGTTCTTGGAGAGGCGATCTGGAGTCTTAATGATGTGCA GTTGCTCAAGGACTTTGGAACTGTTCCCTCTAACTGGTTCCTACTGAGGTCAAGAGTCTGTAGCAAACAAGATTCCTGGAATGTGTCGGGTCAAGGACTT GAAGAGAGTCAGCATTGCAAATGCTTGTCGGGATGGTTCCTGAAACTTGAGAAGCCGAATCTGTCAGCACTTGTACAGGATCTGGGTCAAATGGTTGATC TCAGACTTGATGGTGTGAATATTTCTGCCCAAGGGAATCAATGGTGCCAGGCTCTAGTTTCTTTGCTGCAGAATCTTGAAGTGTTGAGCATGTCCAACTG TTTCCTTTCTGGCCCTTTTGATCCATCTCTTTCAAAACTTCAGTCTCTCTCAGTGATTCGTTTCGACAGCAACAATTTCTCCTCTCCGGTTCCTGATTTC TTTGCTGATTTCAGAAGGTTGACTGTCCTGCAGCTCCGAAGTTGCGGGCTGAGTGGAACATTTCCCGCAAAGATATTTCAAATTCCAAGCTTGGAGGTTC TTGATTTGTTAGATAACGGATTGCTTCACTGGGTTTCACTGGAGTTTCCTCAGAATTGCTCTATGCAGACTCTACTGCTCAGCGGTACAACCTTCTCAGG CAAGTTACCCTCATCAATAGGCAATTTGAGCAAGCTATCTCGGATAGAGCTTGGGGGATGCAATTTGAGTGGACCAGTTCCCAAGTCTACGGAGAATATC ACTCAACTGGTTTATGTGGACTTGGCTTCCAACTATTTCACAGGTCCAATTCCATTACTAGGCTTGTCTAAAAATCTAGTACATCTAGACTTGTCTGGCA ACCAGTTCTCAAATGACATACCTGGTCACTGGACAAGCTTTCAGAAACTTGCCTACGTTGACTTCAGTTCCAATTTCTTGAGTGGGAGCATTCCACCATC TTTGTTCACCATTCCATCCCTACACAAGCTTGATCTCTCTTACAACCAACTTCGAGGTCCCATTCCTCGTGATATCTTCCGGATTCGATCACTTGAAGTG CTATGGATTTCATCTAATAGATTCAATGGAAGTGTACAGCTAAACTGGATTCAGACCCTTCAGAATCTCACCTATCTCGATCTTTCAGACAACAACTTGA CAATTGATGCAACAGACAGTAGTTCTACATTGTCAATCTTTCCTCAGTTTCAATACTTGAATCTAGCATCAAGCAATCTGAGAATGTTTCCCAAATTAGG CAACCAAACACTGCTAGAACATCTGGACCTTTCCGACAACAATATCAAGGGGACAGTACCTCGCTGGATTCTGGAAGCAACTACTATATATCAGCTCAAT CTCTCACACAACCATCTTACGGGTTTTGAGGACCTGCAGATATTGAAGACTGAACAGAGCCATGGACTCATTAAATCCTCCCGTGATCGTTTCACTGGTC AAATTGAGACGAATGACACGACCAAGGCCATCCCGATCGCATCCTACACCAGGCCAATTACAGCAATCAACGCTTGGATCCCACCTCTCCAGATTCTGAG ATCGCGATGCGTTGAAATCAAGATCCTGCTTTATCTGCAGCAAAAGCGACTGCTGTTCTCCCTGGCATCTAGCCTCCTTGGCTTTCCACAAGCGTGTACA GAAGAGGCATCAAGAGGAACCATAGGAGTTGGTTCGGTGTCATTGTATGAGCAAGAAAAGGGAAGCTTTTAG
AA sequence Show only first row Show all	>Lus10002212 pacid=23180534 polypeptide=Lus10002212 locus=Lus10002212.g ID=Lus10002212.BGIv1.0 annot-version=v1.0 MADEFRVVIPGVDHDGKLPRKYTSEGQGATKNVSPPLEWYNVPQGTKTFALVVQDIDAPDPAGPLVPWTVWVVENIPAAVKRLPEGFSGQGDEIAGEYGV VKEGNNDEKVPGWRTPMLPSHGHRLEFKLFALDCELNLGNKVTKEKVEEAVEGHVLGEAIWSLNDVQLLKDFGTVPSNWFLLRSRVCSKQDSWNVSGQGL EESQHCKCLSGWFLKLEKPNLSALVQDLGQMVDLRLDGVNISAQGNQWCQALVSLLQNLEVLSMSNCFLSGPFDPSLSKLQSLSVIRFDSNNFSSPVPDF FADFRRLTVLQLRSCGLSGTFPAKIFQIPSLEVLDLLDNGLLHWVSLEFPQNCSMQTLLLSGTTFSGKLPSSIGNLSKLSRIELGGCNLSGPVPKSTENI TQLVYVDLASNYFTGPIPLLGLSKNLVHLDLSGNQFSNDIPGHWTSFQKLAYVDFSSNFLSGSIPPSLFTIPSLHKLDLSYNQLRGPIPRDIFRIRSLEV LWISSNRFNGSVQLNWIQTLQNLTYLDLSDNNLTIDATDSSSTLSIFPQFQYLNLASSNLRMFPKLGNQTLLEHLDLSDNNIKGTVPRWILEATTIYQLN LSHNHLTGFEDLQILKTEQSHGLIKSSRDRFTGQIETNDTTKAIPIASYTRPITAINAWIPPLQILRSRCVEIKILLYLQQKRLLFSLASSLLGFPQACT EEASRGTIGVGSVSLYEQEKGSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	0	1
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	1.4	0.9429
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	2.0	0.9418
					Lus10032841 [exp]	2.4	0.9410
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10040166 [exp]	3.0	0.9026
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	4.5	0.9154
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	4.5	0.9272
					Lus10021726 [exp]	5.3	0.8867
AT2G23200			Protein kinase superfamily pro...		Lus10012646 [exp]	5.7	0.8946
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10028047 [exp]	6.3	0.8644
					Lus10025164 [exp]	7.5	0.9043

Compare expression of checked genes

Lus10002212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.