Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01310 105 / 1e-26 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT3G21330 89 / 4e-21 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 81 / 2e-19 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G66470 80 / 3e-18 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 79 / 7e-18 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT5G43175 78 / 8e-18 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G33880 77 / 5e-17 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT2G14760 76 / 1e-16 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G27740 75 / 2e-16 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT3G50330 70 / 7e-15 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003386 [exp] 248 / 9e-82 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10042647 [exp] 89 / 8e-22 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 87 / 1e-21 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 87 / 3e-21 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033592 [exp] 81 / 2e-18 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10017634 [exp] 80 / 2e-18 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10001068 [exp] 77 / 4e-17 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 77 / 7e-17 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10012670 [exp] 70 / 8e-15 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120800 [exp] 120 / 7e-35 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.006G102600 [exp] 120 / 8e-35 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.001G191800 [exp] 94 / 1e-22 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 89 / 5e-22 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 87 / 2e-21 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 86 / 9e-21 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G126800 [exp] 81 / 3e-18 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.004G088900 [exp] 77 / 5e-17 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.009G089000 [exp] 77 / 7e-17 AT2G14760 173 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.001G294300 [exp] 77 / 9e-17 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002213 pacid=23180528 polypeptide=Lus10002213 locus=Lus10002213.g ID=Lus10002213.BGIv1.0 annot-version=v1.0 ATGGACTACTTCACCACCATGGCCAGCACCGCCAGCTCCTCCTCAACCAAACAGAAGAAGACCAAACAACCCAAGAACCCCAACCCAAATCCCAACCGAC CCTCCAGATCGGTTCGGCTCTCGACCGACCCACAGAGTGTGGCAGCCAGAGAGAGGCGTCACAGGATCAGCGACCGGTTCAAGATCCTGCAGAGCCTCGT ACCGGGCGGGTCGAAGATGGACACCGTGACAATGCTCGAGCAGGCCATCAACTACGTCAAGTTCCTCAAGACCCAGATCGTCATCCACGAAACCCTCATG AATCAGCCGCAGCTGCCGCCAAATAATAATTATAGTGAGGACGAGACGACGTCGTTTATGTTTACCGACCAAGTAGCAATGCTGCCGGATCTGAGCAATT ACAATAGTATCCCTGGGGAGGGTTCGGGTTTGTTGTACGAGGTACCAGGTGGTGGATGCTCGTCGCAGATGATGATGTACCCGCTGCCGGAGTGTTTTCT CGACGACGGAGGAATGCGGTATATGTGA
AA sequence Show only first row Show all	>Lus10002213 pacid=23180528 polypeptide=Lus10002213 locus=Lus10002213.g ID=Lus10002213.BGIv1.0 annot-version=v1.0 MDYFTTMASTASSSSTKQKKTKQPKNPNPNPNRPSRSVRLSTDPQSVAARERRHRISDRFKILQSLVPGGSKMDTVTMLEQAINYVKFLKTQIVIHETLM NQPQLPPNNNYSEDETTSFMFTDQVAMLPDLSNYNSIPGEGSGLLYEVPGGGCSSQMMMYPLPECFLDDGGMRYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	0	1
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	1.4	0.9256
AT1G68430			unknown protein		Lus10003042 [exp]	3.2	0.9252
AT1G68430			unknown protein		Lus10034103 [exp]	6.0	0.8999
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	6.7	0.8887
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	8.8	0.8841
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	8.9	0.8829
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	9.2	0.8886
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	9.4	0.8894
AT1G11915			unknown protein		Lus10023362 [exp]	11.4	0.8701
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	11.5	0.8654

Compare expression of checked genes

Lus10002213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.