Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05660 275 / 7e-83 AtRLP33 receptor like protein 33 (.1) AT2G32660 263 / 8e-81 AtRLP22 receptor like protein 22 (.1) AT1G47890 269 / 1e-79 AtRLP7 receptor like protein 7 (.1) AT3G05650 266 / 2e-79 AtRLP32 receptor like protein 32 (.1) AT4G13880 261 / 1e-78 AtRLP48 receptor like protein 48 (.1) AT5G25910 260 / 8e-78 AtRLP52 receptor like protein 52 (.1) AT3G11010 261 / 1e-77 AtRLP34 receptor like protein 34 (.1) AT2G33060 259 / 2e-77 AtRLP27 receptor like protein 27 (.1) AT2G33050 259 / 3e-77 AtRLP26 receptor like protein 26 (.1) AT5G27060 259 / 2e-76 AtRLP53 receptor like protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003387 [exp] 669 / 0 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10003389 [exp] 616 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 434 / 4e-141 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10016402 [exp] 419 / 1e-139 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10026415 [exp] 426 / 4e-138 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10004310 [exp] 404 / 6e-132 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10019693 [exp] 392 / 9e-130 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004313 [exp] 391 / 9e-128 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10004309 [exp] 342 / 8e-114 AT1G47890 225 / 6e-66 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 537 / 4e-180 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G120532 [exp] 454 / 5e-152 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G128400 [exp] 319 / 5e-98 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G389100 [exp] 308 / 2e-94 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.001G437700 [exp] 307 / 8e-94 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 304 / 6e-93 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.011G141100 [exp] 286 / 3e-89 AT2G33020 295 / 2e-89 receptor like protein 24 (.1) Potri.001G437600 [exp] 286 / 3e-89 AT2G32660 306 / 5e-96 receptor like protein 22 (.1) Potri.001G437800 [exp] 283 / 6e-88 AT2G32660 314 / 6e-99 receptor like protein 22 (.1) Potri.012G025400 [exp] 292 / 1e-87 AT1G45616 399 / 7e-122 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10002214 pacid=23180539 polypeptide=Lus10002214 locus=Lus10002214.g ID=Lus10002214.BGIv1.0 annot-version=v1.0 ATGCATGACAACCAGCTTCAAGGTGATGTTCCTATTATTCCATTATCAACACTACCAATGACATATGTGGATTACTCCCACAACTTTCTCAACGGTTCCA TTCCAGCTGAAATTAGCAATTACCTTTCCCTTGCCTTATTCTTTTCATTATCAAACAACAGCCTCGAAGGAGCAATCCCGGCAAGCATTTGTAATGCTGA ATTTCTCCAAGTCCTTGATTTGTCAAGCAACAATCTGACTGGCTCGATTCCGAATTGTTTGATGGAGAATATCACTACACTTGCTGTTCTGAATCTAAAA GGCAATAAGTTCAGTGGCAATATACCAGACTCCTTCCAGTCATCTTGTTCGCTACAGACTCTTGACCTCAGCAGGAACCAGTTAGAGGGAACAGTTCCAA AATCCTTGAGCAACTGCAGAGCATTAGAAGTCTTAGATCTTGGCAGCAACAGATTATCAGATCGCTTCCCTTGTCTTCTAAAAAATAAAACCAATTTGCG AGTCCTTGTCCTGAGGGGAAACCAGTTTTATGGAGACCTTGGATGCTATAAGATCTCTGGTAATTGGGAAAAGCTTCAAATCGTCGACCTAGCTTTCAAT AATTTTTCTGGTAAAGTGAACAGCAGGTGCTTAACTACATGGGAAGCCATGATGGGAGACAGAAATGGAATGGACGACCACCTCAAATTCGCGCCCTTCC ACTTCACTCAACTCTACTATCAAGATTCCACAACTATTACCACCAAGGGCCTTCAAATGGAATTTGTGAAGATCCTGACAGTGTTCACTGCCATTGATTT CTCAAGCAACAACTTTGAAGGGCCAATACCAGAAAGCCTCGGGAAATTCAAAGCACTTTACGTCCTCAATTTCTCACACAACGCATTCACTCGCGAAATT CCATCAGCCTTAGGCAACGTGTCACAGCTGGAGTCACTGGATCTCTCAAATAACAAGCTCACTGGTCGGATCCCTCAGGAGCTCACGGAGTTGACATTTC TTTCAGTCCTGAACTTGTCATATAATCATCTGGATGGACGCATCCCAACAGGACGCCAGTTCCAAACATTTGAGAATTCTTCTTTCGAAGGTAATCCAGA TTTATGTGGCAGCCCTTTCACCAAATCCTGCTCAGATATCAGCACCACGCCTCCTGCTCAGAAGGAATCAGGGAAACCAAGCATCGACTGGGAGTTCATA GTCCCTGGAATCGGCTTCGGAGCTGGAGCAGCACTTGCGGTGGCACCATTACTTTTCAGCAAAAAGGCAAACAAGTGGCTCGACGATCACATCGACAGAA TCCTCCTGGTGCTCCTCCCACTTTTCGGATTGAGATACTACACAAGCAACGACTGGAGGAGAGTTCAGCCTGAAGAGATTCTAGACCATTACGATTTTGA TGACGATGAGGAGGAGGACGAAGATGAAAGCTACGATGAATTCTTCCAAGGCAAGTACTGCATATACTGCACGAAGCTTGATACCACAAGAACAATGGCC ATCCACGACCCCAAGTGTACCTGCCGCCAGTCACGTACAGGATCCACATTTTCTTCCCCCTTCTCTTCAACCACAACTCTATAA
AA sequence Show only first row Show all	>Lus10002214 pacid=23180539 polypeptide=Lus10002214 locus=Lus10002214.g ID=Lus10002214.BGIv1.0 annot-version=v1.0 MHDNQLQGDVPIIPLSTLPMTYVDYSHNFLNGSIPAEISNYLSLALFFSLSNNSLEGAIPASICNAEFLQVLDLSSNNLTGSIPNCLMENITTLAVLNLK GNKFSGNIPDSFQSSCSLQTLDLSRNQLEGTVPKSLSNCRALEVLDLGSNRLSDRFPCLLKNKTNLRVLVLRGNQFYGDLGCYKISGNWEKLQIVDLAFN NFSGKVNSRCLTTWEAMMGDRNGMDDHLKFAPFHFTQLYYQDSTTITTKGLQMEFVKILTVFTAIDFSSNNFEGPIPESLGKFKALYVLNFSHNAFTREI PSALGNVSQLESLDLSNNKLTGRIPQELTELTFLSVLNLSYNHLDGRIPTGRQFQTFENSSFEGNPDLCGSPFTKSCSDISTTPPAQKESGKPSIDWEFI VPGIGFGAGAALAVAPLLFSKKANKWLDDHIDRILLVLLPLFGLRYYTSNDWRRVQPEEILDHYDFDDDEEEDEDESYDEFFQGKYCIYCTKLDTTRTMA IHDPKCTCRQSRTGSTFSSPFSSTTTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Lus10002214 [exp]	0	1
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	1.0	0.9596
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	6.0	0.9478
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10026600 [exp]	6.2	0.9254
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	6.2	0.9494
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	6.3	0.9398
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	6.9	0.9416
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	7.0	0.9445
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	8.1	0.9448
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	8.5	0.9455
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015517 [exp]	8.5	0.9261

Compare expression of checked genes

Lus10002214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.