Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 201 / 3e-55 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G28890 189 / 3e-52 AtRLP43 receptor like protein 43 (.1.2) AT1G71400 189 / 8e-52 AtRLP12 receptor like protein 12 (.1) AT3G05370 175 / 9e-47 AtRLP31 receptor like protein 31 (.1) AT3G23110 174 / 2e-46 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) AT4G13920 173 / 4e-46 AtRLP50 receptor like protein 50 (.1) AT4G13810 169 / 2e-45 AtRLP47 receptor like protein 47 (.1.2) AT5G65700 169 / 1e-44 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G71390 167 / 2e-44 AtRLP11 receptor like protein 11 (.1) AT5G20480 167 / 4e-44 EFR EF-TU receptor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003387 [exp] 894 / 0 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10003389 [exp] 874 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 570 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 545 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10002212 [exp] 471 / 1e-159 AT5G01300 226 / 4e-70 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2) Lus10009330 [exp] 405 / 8e-133 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10006824 [exp] 299 / 1e-94 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10006825 [exp] 288 / 1e-86 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10027580 [exp] 258 / 4e-79 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 556 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 360 / 2e-113 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 268 / 2e-79 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.011G021400 [exp] 235 / 2e-67 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.011G055200 [exp] 230 / 6e-66 AT3G25020 312 / 6e-92 receptor like protein 42 (.1) Potri.016G126900 [exp] 229 / 2e-65 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127000 [exp] 224 / 1e-63 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.012G029000 [exp] 220 / 2e-62 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.012G008666 [exp] 218 / 2e-62 AT1G45616 260 / 5e-74 receptor like protein 6 (.1) Potri.012G027400 [exp] 215 / 8e-61 AT3G05660 347 / 3e-105 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002215 pacid=23180532 polypeptide=Lus10002215 locus=Lus10002215.g ID=Lus10002215.BGIv1.0 annot-version=v1.0 ATGAAACAACAGCTGCAGCAACTCATATGGTTTCTCTTGATGCCTCTTCTCTACACGCATGTCTCTGGGAGATGCCAGGGAGACCAGCAATCGCTGCTGC TTCAGTTGAAGCAGGGATTTAATGTCAGCAGCTCATCGTCGTCTCGAAATCTGGCGAGGTGGGATTCAACTATTGATTGCTGTGATTGGGTTGGTGTAGG ATGTGATCGGGGTGGCCTCGGTCGTGTTATTCGTCTCAATTTGAGCGGGGAAATGATCACTGGAGGATTTGATAACTCCATGGCTCTGTTCAGTCTTCAA TATCTGCAGATCCTGGATTTGTCTTTTAACAGCTTCAACACGACTGTTCCAACTGGGATTGGTAATCTTACTGATTTGAGGTATCTAAACTTATCAAGTG CTGGATTTTTCGGGCAAATTCCAGCAGAAATTTCTAGCTTGACGAAGTTGGTTGGTTTGGATCTCTCGATGCTTTATTTTCCGGGTGTCCTGTCCCTGAA ACTTGAGAATCCAAATCTGTCAGGACTTGTAAGGAATCTGGGTCAACTGGTTGATCTCAGACTTGATGGTGTGAATATATCTGCCCCAGGGAATCAATGG TGCCAGGCTCTAGCTTCTTCGCTGCAGAATCTCGAAGTGTTGAGCATGTCCAACTGCTTCCTTTCTGGCCCTTTTCATTCCTCTCTTTCGGAACTTCGGT CTCTCTCGGTGATTCGTTTGGACAGCAACGAATTCTCCACTCCGATTCCTGATTTCTTCGCTAATTTCGGGAGCTTGACTGTCCTGCGGCTCAGTACTTG CGGGCTCAGTGGAACATTTCCCGCAAAAATATTTCAGATTCCAAGCTTGGAGGTTCTTGATTTGTCAAATAACGGATTGCTTCAAGGGGGTTTACCAGAA TTTCCTCTGAATCACTCCATGCAGAATCTACTGCTCAGCGGTACAAACTTCTCAGGCTTTTTACCATCATCAACGGGAAATTTGGGTAAATTATCACGGA TAGAGCTTGAGGGATGCAATTTCAGTGGATCAATTCCGAAGTCTATGGAAAATCTTACTCAACTGGCCTATGTAGACTTGGCATCCAACCATTTCACAGG TCCAATTCCATCACTAGGCTTGTCTAAGAATCTAGTTTATCTAGACTTGTCTTATAACCAGTTATCAGGTGATATACCCGCTCGATGGGAAAGTTTTGAG GAACTTGTCTATGTAGACTTCCGACACAATTCTTTCAATGGAACCATTCCATCATCTTTGCTGGCCATTCCATCCCTGCAGAAGCTTCAGCTCTCTTTCA ACCAACTTCGAGGACCGGCTCCAGCAATTAACAATGCTTCCTTGGTTTTGGATACTCTGGATTTAAGCAGCAATAATTTGGAAGGTTCCATCCCTCGTGA TATCTTCCAGATTCGATCACTTAAAGTTCTCTTGCTTTCATCTAATAGATTCAATGGAAGTGTACTGCTAAACTGGATTCAGTCCCTCCAGAATCTCACT GCTCTTGACCTCTCATACAACAACTTGACGATTGATGCAAGTAGCAACAATCCTACCATGTCAACTTGA
AA sequence Show only first row Show all	>Lus10002215 pacid=23180532 polypeptide=Lus10002215 locus=Lus10002215.g ID=Lus10002215.BGIv1.0 annot-version=v1.0 MKQQLQQLIWFLLMPLLYTHVSGRCQGDQQSLLLQLKQGFNVSSSSSSRNLARWDSTIDCCDWVGVGCDRGGLGRVIRLNLSGEMITGGFDNSMALFSLQ YLQILDLSFNSFNTTVPTGIGNLTDLRYLNLSSAGFFGQIPAEISSLTKLVGLDLSMLYFPGVLSLKLENPNLSGLVRNLGQLVDLRLDGVNISAPGNQW CQALASSLQNLEVLSMSNCFLSGPFHSSLSELRSLSVIRLDSNEFSTPIPDFFANFGSLTVLRLSTCGLSGTFPAKIFQIPSLEVLDLSNNGLLQGGLPE FPLNHSMQNLLLSGTNFSGFLPSSTGNLGKLSRIELEGCNFSGSIPKSMENLTQLAYVDLASNHFTGPIPSLGLSKNLVYLDLSYNQLSGDIPARWESFE ELVYVDFRHNSFNGTIPSSLLAIPSLQKLQLSFNQLRGPAPAINNASLVLDTLDLSSNNLEGSIPRDIFQIRSLKVLLLSSNRFNGSVLLNWIQSLQNLT ALDLSYNNLTIDASSNNPTMST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10002215 [exp]	0	1
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	4.0	0.8906
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Lus10014150 [exp]	5.5	0.8386
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10011125 [exp]	11.8	0.8453
AT1G67000			Protein kinase superfamily pro...		Lus10014923 [exp]	16.9	0.8620
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	25.0	0.8548
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	35.2	0.8529
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	43.9	0.8435
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10002578 [exp]	47.2	0.8387
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	57.2	0.7967
AT5G38260			Protein kinase superfamily pro...		Lus10025554 [exp]	59.0	0.8097

Compare expression of checked genes

Lus10002215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.