Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01310 854 / 0 bHLH APTX, bHLH140 APRATAXIN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003385 [exp] 1343 / 0 AT5G01310 862 / 0.0 APRATAXIN-like (.1) Lus10029039 [exp] 43 / 0.0004 AT2G40600 310 / 3e-108 appr-1-p processing enzyme family protein (.1) Lus10034226 [exp] 42 / 0.0004 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120200 [exp] 993 / 0 AT5G01310 877 / 0.0 APRATAXIN-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [flax] [poplar] MACRO PF01661 [flax] [poplar] Macro Macro domain CL0265 [flax] [poplar] HIT PF11969 [flax] [poplar] DcpS_C Scavenger mRNA decapping enzyme C-term binding
Representative CDS sequence Show only first row Show all	>Lus10002216 pacid=23180535 polypeptide=Lus10002216 locus=Lus10002216.g ID=Lus10002216.BGIv1.0 annot-version=v1.0 ATGGACATGGACAGTGAAGAAGCTTCTAAACCTCAAGAAGTTGGCGACATCATAGGAAAATCTCCGGTCGTAGTTTTACTAGTGGGAGCTCCCGGCAGTG GCAAGTCCACCTTCTGCGAACACGTCATGCGATCGTCATCGCGATCCTGGACTCGCGTTTGCCAGGATACGATTAACAATGGTAAATCTGGGACGAAGCC TCAATGCTTAAAGAGTGCAGCCAGTGCGTTAAAGGATGGTAAAAGTGTGTTCATCGATAGATGCAATCTGGATAGAGAGCAGCGTGCTGAGTTTGTGAAG CTCCAGGGTGCGAAAAAAGATGTGCATGCTGTAGTGCTTGATCTTCCGACTCAGCTCTGTATATCTCGGTCCGTGAAACGCACTGGCCATGAAGGAAATC TGCAAGGCGGAAAAGCGGCCGCAGTTGTAAATAGAATGCTTCAAAAGAAGGAACTGCCTCAGCTTAATGAAGGCTTTAGTAGAATCACCTTTTGCCAGAA TGAAAGTGAAGTCGAGGCTGCAATTAAGGCGTACAGTGAGCTTGGTCCTGAAGAATCTCTCCCAGACGGTTGTTTCGGGCAGAAAACGCAGAAGGCAAAA GTCCAACTTGGCATAATGAAATTCTTAAAGAAAGTTGATACTTCTGCCAACAAAGATTCAAAATCACTTGGTGCTTCGAGTCCAGCTTCTAATCTAAACA GCAATGTAAATGATACTCACCTTAAAGGACAAGAGAGTATTCCTTCATTGGCTGAAGGTGCCAGTAAACAGATTCAAGAAAGTCGATCCCCACCAAAGGT TTCTCTCAAGGATGATGCTTCCTTCAGCAATGTTCCCACTCTGGCATTTCCATCCATTTCGACATCAGATTTTCAGTTTGACAATGAAAGGGCTTCTGAT ATCATTGTTGAAAAAGCAGAAGAGTTTGTGAATAAGCTTGGGAATGCCAGACTTGTTCTTGTGGACTTGAGCCACAGATCAAGAATATTGTCTTTGGTTA AGACAAAAGCTGCTCATAGAAACATTGATTCAAACAAGTTCTTCACTTTTGTTGGAAATATAACTGAACTCTACTCTCAAGGTGGCCTCCAGTGCAACGT TATAGCTAACGCAGCCAATTGGCGCCTTAAGCCGGGAGGTGGAGGTGTAAATGCTGCTATCTTCGGTGCCGCTGGTCCATCTTTTGAAGTTGCTACGAAG GAATGTGCAAAATCTCTGGACCCTGGACATGCCATAGTTGTTCCACTTCCTTCAGAATCACCCTTACACAGTAGAGAAGGAATAACCCACGTCATACATG TCGTAGGTCCAAACATGAACCCTCAAAGACCGAACTGTCTCAACAATGATTATGCCAAAGGATGTCAAATTCTCCGTGAAACATACACCGCACTTTTTGA CGGTTTTGCATCTGTAGTGAAGACCCAGATGAAAACAAGTGGAGAGAACTCGGAATCAAATTCTTCTAAAAGCCTTCCATTGATCAGCGAGCAAAAGCAC AAAAGAGACGGCGAATCTGCCTCCATAGGGAACTCACGAAAAAGGCGTCCTGGCTCTTCGAAGAACTGGGGCCCATGGGCTCAAGCTCTGTATGATATCG CCATGCATCCCGAGAAGCATGAAGGTGAGTTGCTGGAGGTTCGTGACAATGTTGTCGTGCTCAACGATCTATATCCGAAGGCAAAAAAGCATGTGTTAGT GGTGACTCGGCATGAAGGTCTGGACCAACTCGCCGATGCAAACGAAGAACACATTCAACAGTTGTTGACGATGCATTCTGTGGGCATGAAATGGGCTGAT CATTTCCTGCAAGAAGATTCGTCTCTAGTCTTCCGACTCGGATATCACTTGGAACCGTCGATGCGACAGCTACACTTGCACATTATCAGCCAGGATTTCG ACTCGAGCCATCTAAAGAACAAGAAACACTGGAACTCCTTCAATACCGCCTTTTTCAGAGATTCTGTTGACGTGATGGAAGAAATCAAAAGCCATGGTAA AGCAAAACTCGAAGATGACGAGAAGCCTTTGGCGACGGAGCTGCGATGCCATCGATGTAGGAGCGCGCATCCTAACATGCCCAAGTTGAAGTGGCACATC CAACAATGTCGAGCTCCGTTCCCTTCGAGCATGCTCGAGTATGGCAGGTTAGTGTTCGGAAAATAA
AA sequence Show only first row Show all	>Lus10002216 pacid=23180535 polypeptide=Lus10002216 locus=Lus10002216.g ID=Lus10002216.BGIv1.0 annot-version=v1.0 MDMDSEEASKPQEVGDIIGKSPVVVLLVGAPGSGKSTFCEHVMRSSSRSWTRVCQDTINNGKSGTKPQCLKSAASALKDGKSVFIDRCNLDREQRAEFVK LQGAKKDVHAVVLDLPTQLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPQLNEGFSRITFCQNESEVEAAIKAYSELGPEESLPDGCFGQKTQKAK VQLGIMKFLKKVDTSANKDSKSLGASSPASNLNSNVNDTHLKGQESIPSLAEGASKQIQESRSPPKVSLKDDASFSNVPTLAFPSISTSDFQFDNERASD IIVEKAEEFVNKLGNARLVLVDLSHRSRILSLVKTKAAHRNIDSNKFFTFVGNITELYSQGGLQCNVIANAANWRLKPGGGGVNAAIFGAAGPSFEVATK ECAKSLDPGHAIVVPLPSESPLHSREGITHVIHVVGPNMNPQRPNCLNNDYAKGCQILRETYTALFDGFASVVKTQMKTSGENSESNSSKSLPLISEQKH KRDGESASIGNSRKRRPGSSKNWGPWAQALYDIAMHPEKHEGELLEVRDNVVVLNDLYPKAKKHVLVVTRHEGLDQLADANEEHIQQLLTMHSVGMKWAD HFLQEDSSLVFRLGYHLEPSMRQLHLHIISQDFDSSHLKNKKHWNSFNTAFFRDSVDVMEEIKSHGKAKLEDDEKPLATELRCHRCRSAHPNMPKLKWHI QQCRAPFPSSMLEYGRLVFGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002216 [exp]	0	1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	6.4	0.7325
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019772 [exp]	26.7	0.6388
AT1G09050			unknown protein		Lus10004495 [exp]	43.4	0.6699
AT5G66820			unknown protein		Lus10002968 [exp]	48.5	0.6703
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	54.4	0.6436
AT5G48385			FRIGIDA-like protein (.1)		Lus10009979 [exp]	59.0	0.5911
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017664 [exp]	87.6	0.6246
AT3G14460			LRR and NB-ARC domains-contain...		Lus10002737 [exp]	131.7	0.5987
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	150.6	0.5637
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	157.7	0.5796

Compare expression of checked genes

Lus10002216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.