Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54960 1044 / 0 PDC2 pyruvate decarboxylase-2 (.1) AT4G33070 1042 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01320 1035 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 998 / 0 PDC3 pyruvate decarboxylase-3 (.1) AT3G48560 78 / 8e-15 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003384 [exp] 1212 / 0 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10005048 [exp] 1090 / 0 AT5G54960 1067 / 0.0 pyruvate decarboxylase-2 (.1) Lus10027820 [exp] 1089 / 0 AT5G54960 1058 / 0.0 pyruvate decarboxylase-2 (.1) Lus10015291 [exp] 967 / 0 AT4G33070 978 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10018181 [exp] 684 / 0 AT4G33070 683 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10025654 [exp] 683 / 0 AT5G54960 686 / 0.0 pyruvate decarboxylase-2 (.1) Lus10016751 [exp] 83 / 2e-16 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 71 / 2e-12 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 54 / 1e-07 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120100 [exp] 1076 / 0 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 1053 / 0 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 975 / 0 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 969 / 0 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 950 / 0 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.015G097200 [exp] 81 / 8e-16 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.012G098300 [exp] 80 / 2e-15 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10002217 pacid=23180527 polypeptide=Lus10002217 locus=Lus10002217.g ID=Lus10002217.BGIv1.0 annot-version=v1.0 ATGGATACGAAGATCAGATCAATCGACGCTAGCATGCCGAACAGCACCGACGTCTGTTGTGCTGCAAACGGCGCCGTCTCGACGATCGAGAACTCCGGCG TCCTCCCGTCCTCCATCGTCCAAGCCACCGAGTCAACTCTCGGCCGCCACCTCGCCCGCCGCCTGGTCCAAGTCGGAGTCAGCGACGTTTTCACTGTTCC CGGAGATTTCAACCTGACGCTTCTCGATCATCTCATCGCAGAGCCCGGGCTCAACAACGTTGGCTGCTGCAACGAGCTCAACGCTGGTTACGCCGCTGAC GGATACGCGAGATCTCGCGGTGTAGGCGCTTGCGTCGTGACGTTCACTGTCGGCGGACTTAGTGTGATCAACGCGATCGCTGGAGCTTACAGTGAGAATC TCCCCGTCATTTGCATCGTCGGAGGGCCTAATTCGAACGATTATGGAACTAACAGGATTCTTCATCACACTATCGGCCTTGCTGATTTCACTCAGGAGCT CAGATGCTTCCAGGCCGTTACCTGCTTCCAGGCTGTGGTGAATAACTTGGAAGACGCACATGAGCTGATCGACACCGCGATTTCCACCGCCTTGAAAGAG AGCAAGCCTGTTTACATCAGCGTCGGCTGCAATTTGCCTGCGATTCCTCACCCAACCTTCAGCCGAGATCCGGTTCCCTTTTCTCTAAACCCCAAATTGA GCAATAAGCTAGGTCTTGAGGCGGCAGTGGAAGCAGCAGCGGAGTTTCTCAACAAGGCAGTGAAGCCAGTTCTGGTAGCAGGGCCAAAGCTGAGAGTAGC CAAGGCTTGCAATGCCTTTGTTGAATTAGCAGACGCTTGTGGTTATCCTTTGGCAGTAATGCCATCAGGGAAAGGACTCGTCCCAGAGCATCACCCTCAT TTCATAGGGACATACTGGGGAGCTGTGAGCTCAGCCTTCTGCGCCGAGATTGTCGAATCAGCCGATGCTTATCTGTTCGTTGGCCCGATATTCAACGACT ACAGCTCGGTCGGGTACTCCTTGCTCCTCAAGAAGGAGAAGGCCATCATCGTGCAGCCTGATCGAGTGGTGATTGCTAATGGACCTGCATTTGGCTGTGT CCTGATGAAGGATTTCCTGCAAGGGCTTGCGAAGAAGCTCAAGTATAACAGTACTGCGTATGAGAATTACCATAGGATCTTTGTCCCTGAAGGTGTTCCT TTGAAGAGTGGACCTAAGGAGCCCCTGAGGGTTAATGTGTTGTTCCAGCATATACAGAAGATGCTCTCTGGTGATACTGCTGTGATTGCTGAGACTGGTG ACTCCTGGTTCAACTGCCAGAAGCTTAAACTGCCAAAGGGCTGCGGGTATGAATTCCAGATGCAATATGGATCGATCGGTTGGTCCGTCGGTGCAACTCT TGGGTACGCTCAAGCTGTGCCGGGGAAGCGCGTGATCGCTTGCATTGGTGATGGTAGCTTTCAGGTGACAGTGCAAGACATTTCGACAATGATCAGATGC GGCCAGAAGACGATAATCTTCCTGATCAACAACGGCGGCTACACCATCGAGGTCGAAATCCACGATGGTCCTTACAACGTGATCAAGAACTGGAACTACA CTGCCTTGGTCGATGCTATCCATAACGGGGAAGGCAATGTCTGGACCACTAAGGTTTTCTGTGAAGAGGAGCTAGTGGAAGCCATCGAAACAGCGACCGG TGAAAAGAAAGACAGCTTGTGCTTCATAGAGGTGATTGTTCACAAGGATGACACCAGCAAAGAGCTTCTGGAATGGGGATCCAGAGTCTCTGCTGCCAAC AGCCGCCCACCAAACCCGCAGTAG
AA sequence Show only first row Show all	>Lus10002217 pacid=23180527 polypeptide=Lus10002217 locus=Lus10002217.g ID=Lus10002217.BGIv1.0 annot-version=v1.0 MDTKIRSIDASMPNSTDVCCAANGAVSTIENSGVLPSSIVQATESTLGRHLARRLVQVGVSDVFTVPGDFNLTLLDHLIAEPGLNNVGCCNELNAGYAAD GYARSRGVGACVVTFTVGGLSVINAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLADFTQELRCFQAVTCFQAVVNNLEDAHELIDTAISTALKE SKPVYISVGCNLPAIPHPTFSRDPVPFSLNPKLSNKLGLEAAVEAAAEFLNKAVKPVLVAGPKLRVAKACNAFVELADACGYPLAVMPSGKGLVPEHHPH FIGTYWGAVSSAFCAEIVESADAYLFVGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIANGPAFGCVLMKDFLQGLAKKLKYNSTAYENYHRIFVPEGVP LKSGPKEPLRVNVLFQHIQKMLSGDTAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAVPGKRVIACIGDGSFQVTVQDISTMIRC GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTALVDAIHNGEGNVWTTKVFCEEELVEAIETATGEKKDSLCFIEVIVHKDDTSKELLEWGSRVSAAN SRPPNPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10002217 [exp]	0	1
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	1.0	0.8883
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	5.5	0.8539
AT4G10265			Wound-responsive family protei...		Lus10039754 [exp]	5.7	0.8486
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	6.2	0.8666
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10012280 [exp]	7.3	0.8652
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	9.4	0.8314
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	10.4	0.8614
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	11.8	0.8309
AT3G53390			Transducin/WD40 repeat-like su...		Lus10026500 [exp]	14.2	0.8097
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	14.7	0.8506

Compare expression of checked genes

Lus10002217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.