Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03290 641 / 0 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 600 / 0 IDH-VI isocitrate dehydrogenase VI (.1) AT4G35260 342 / 3e-116 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT2G17130 327 / 2e-110 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT4G35650 325 / 1e-109 IDH-III isocitrate dehydrogenase III (.1) AT1G32480 178 / 2e-54 IDH-IV isocitrate dehydrogenase IV (.1) AT1G31180 153 / 1e-42 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT5G14200 152 / 2e-42 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G80560 149 / 5e-41 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT5G14590 47 / 1e-05 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023192 [exp] 717 / 0 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 696 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 688 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10041824 [exp] 335 / 2e-113 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10028374 [exp] 335 / 2e-113 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 320 / 2e-107 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 301 / 3e-101 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10030344 [exp] 155 / 2e-42 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 145 / 1e-39 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091200 [exp] 652 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.006G126700 [exp] 649 / 0 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.004G204300 [exp] 336 / 9e-114 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.005G099600 [exp] 333 / 1e-112 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 333 / 1e-112 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 325 / 7e-110 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.001G185600 [exp] 152 / 3e-42 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Potri.001G347800 [exp] 46 / 4e-05 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.017G144541 [exp] 43 / 0.0003 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 42 / 0.0004 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10002221 pacid=23169465 polypeptide=Lus10002221 locus=Lus10002221.g ID=Lus10002221.BGIv1.0 annot-version=v1.0 ATGGCGTTCAACCAGTTCCTCGGTCGCGCTCTTAGAACCCGTTCCGACCAGATCCTCTCCGTTTCCTCCGCCTTCTCTCCCGCCAGGGCCTTCTCCTCCG CTCCCATCACCGCCACTCTCTTCCCCGGCGACGGTATCGGCCCCGAGATCGCGGAGTCCGTCAAACAGGTGTTCAGGGAAGCTGAGGTGCCAATTCAATG GGAAGAACATTATGTTGGCACTGAAATAGATCCCAGAACCCAGAGCTTTCTAACATGGGAAAGTTTAGAGTCAGTAAGACGGAACCGAGTGGGTCTGAAA GGGCCAATGGCTACTCCAATTGGGAAAGGCCATCGTTCTTTGAACCTCACTCTCAGGAAAGAACTTAATTTGTATGCCAATGTCAGGCCTTGCTACAGCC TTCCTGGTTACAAAACTCGATATGATGATGTGAATCTTATCACCATTCGTGAGAACACTGAAGGAGAATACAGTGGACTTGAGCACCAAGTGGTTAGAGG AGTGGTCGAAAGTCTCAAGATCATTACTCGCCAGGCCAGTTTGAGGGTAGCTGAGTATGCTTTTCATTACGCAAAAGCGCATGGAAGAGAGAGGGTGTCT GCTATACATAAAGCTAACATCATGCAGAAAACTGATGGCCTTTTCCTTAAGTGCTGTCGTGAGGTTGCTGAGAAGTATCCTGAGATAACATATGAAGAGG TTGTCATCGACAACTGTTGTATGATGCTTGTGAAGAATCCAGCACTCTTTGATGTATTGGTTATGCCTAATCTCTACGGTGACATCATCAGTGATCTTTG TGCTGGTTTAATTGGTGGTCTGGGATTGACACCAAGTTGCAATATTGGCGAGGGAGGAATAGCTCTTGCTGAGGCTGTCCATGGTTCTGCTCCTGACATT GCTGGGAAGAACTTGGCGAATCCAACTGCTCTGCTACTGAGTGGTGTGTCGATGTTGCGGCATCTGGAGTTCCATGATAAGGCGGACAGGATTCAGAAGG CCGTACTGGACACAATCGCGGAAGGCAAGTTCCGAACTGCAGATCTCGGAGGAAGCTCTACAACGAGTGATTTCACAAAGGCCATCTGCGATCACCTTTG A
AA sequence Show only first row Show all	>Lus10002221 pacid=23169465 polypeptide=Lus10002221 locus=Lus10002221.g ID=Lus10002221.BGIv1.0 annot-version=v1.0 MAFNQFLGRALRTRSDQILSVSSAFSPARAFSSAPITATLFPGDGIGPEIAESVKQVFREAEVPIQWEEHYVGTEIDPRTQSFLTWESLESVRRNRVGLK GPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKAHGRERVS AIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDI AGKNLANPTALLLSGVSMLRHLEFHDKADRIQKAVLDTIAEGKFRTADLGGSSTTSDFTKAICDHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	0	1
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	3.9	0.8351
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	4.4	0.8512
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10006435 [exp]	7.2	0.8327
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	8.0	0.8477
AT4G36750			Quinone reductase family prote...		Lus10014325 [exp]	8.4	0.8093
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041278 [exp]	9.8	0.8142
AT5G64660		ATCMPG2	"CYS, MET, PRO, and GLY protei...		Lus10005810 [exp]	11.0	0.7750
AT3G53950			glyoxal oxidase-related protei...		Lus10024342 [exp]	14.4	0.8104
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10009728 [exp]	18.7	0.7807
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	19.1	0.7770

Compare expression of checked genes

Lus10002221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.