Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37220 194 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 155 / 7e-45 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 151 / 5e-44 CP31B chloroplast RNA-binding protein 31B (.1) AT3G53460 122 / 2e-32 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT1G60000 119 / 8e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52150 105 / 6e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 107 / 9e-27 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT1G01080 86 / 4e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 76 / 2e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 70 / 1e-14 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023191 [exp] 340 / 1e-117 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 213 / 8e-68 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 193 / 1e-57 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10041952 [exp] 140 / 2e-39 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10017962 [exp] 139 / 4e-39 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10023723 [exp] 139 / 7e-39 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029372 [exp] 108 / 2e-27 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 104 / 1e-25 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10041602 [exp] 97 / 1e-23 AT3G52150 263 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090700 [exp] 202 / 6e-64 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 181 / 2e-55 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 150 / 2e-43 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 145 / 2e-41 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 144 / 2e-41 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.008G172100 [exp] 137 / 2e-38 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 132 / 1e-36 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G202000 [exp] 108 / 1e-27 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 105 / 5e-26 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.009G065900 [exp] 99 / 3e-24 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10002222 pacid=23169462 polypeptide=Lus10002222 locus=Lus10002222.g ID=Lus10002222.BGIv1.0 annot-version=v1.0 ATGGCTTCCACAGCTACTACAGCCACGGCTTCGTCCCTAATAATCCCCAACACCAAGCCTTCATCTTTCACCTCCATTGCCAAGCCCACTTCCGTCTTCT TCGTACCTTATTCCTCCTCGCCGCTCAAGCTTTCATGTCTCCAGCTCTCTATCCCTCATCTTTCTTCTTCTTTCTCCTCTCGTTTCGTGCGTAGGGTCTC CGTTTCCTCCGATTTCGACCAGGAGGATGGCTTGATGATAGGTGAAGATGAAGATGGAGATGACGATAGCGAGGATGGCGCCGCCGGTTACGCCCCTTCC CCTTCCCTCAAATTGTACGTCGGGAATCTCCCTTTCTCTGTCGACAGCGCTCAATTGGCCGGCATCTTTGAGACCGCTGGAAATGTTGAGATGGTTGAGG TGGTATATGACAAGATTTCTGGGAGGAGCAGGGGATTTGCATTTGTCACCATGTCTACTGTTGAGGAAGCTGAATCTGCTGCTCAGCAATTCAATGGATA TGAACTTGACGGAAGGCAATTGAGGGTGAATGCAGCAGGGAATCCTCCTCCCCGCGACAACTCCTCCCCGTTCGCTAGAGGTGGGGGCAGAGTTGGCGGT GGTGGCGGGGGTGACGAGAACCGCCTCTATGTGGGTAACCTTTCATGGGGGGTTGACAACTCTCAACTTGAGGCTTTGTTCAGTGAGCATGGCAAGGTTG TCGACGCAAGGGTTGTTTATGACAGGGAAAGTGGTAGGTCAAGGGGCTTTGGTTTCGTGTCTTTCAGCTCTGCTGACGATATGAATAATGCCCTTGATTC CCTCGATGGCGCTGATTTGGATGGGAGATCGATTCGAGTTTCTGTGGCTGAATCTAGGCCAAGGCGTTTTTGA
AA sequence Show only first row Show all	>Lus10002222 pacid=23169462 polypeptide=Lus10002222 locus=Lus10002222.g ID=Lus10002222.BGIv1.0 annot-version=v1.0 MASTATTATASSLIIPNTKPSSFTSIAKPTSVFFVPYSSSPLKLSCLQLSIPHLSSSFSSRFVRRVSVSSDFDQEDGLMIGEDEDGDDDSEDGAAGYAPS PSLKLYVGNLPFSVDSAQLAGIFETAGNVEMVEVVYDKISGRSRGFAFVTMSTVEEAESAAQQFNGYELDGRQLRVNAAGNPPPRDNSSPFARGGGRVGG GGGGDENRLYVGNLSWGVDNSQLEALFSEHGKVVDARVVYDRESGRSRGFGFVSFSSADDMNNALDSLDGADLDGRSIRVSVAESRPRRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	0	1
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	1.0	0.9528
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	4.5	0.9126
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	4.6	0.9209
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	4.7	0.9244
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Lus10027035 [exp]	7.3	0.8714
AT3G51510			unknown protein		Lus10034765 [exp]	7.3	0.9118
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	10.0	0.9122
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	12.6	0.8773
AT3G23760			unknown protein		Lus10032527 [exp]	13.3	0.9060
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042469 [exp]	14.0	0.8854

Compare expression of checked genes

Lus10002222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.