Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63260 339 / 3e-118 TET10 tetraspanin10 (.1.2.3) AT2G23810 152 / 5e-45 TET8 tetraspanin8 (.1) AT3G45600 153 / 6e-45 TET3 tetraspanin3 (.1) AT4G30430 144 / 1e-41 TET9 tetraspanin9 (.1) AT4G28050 144 / 1e-41 TET7 tetraspanin7 (.1) AT1G18520 139 / 7e-40 TET11 tetraspanin11 (.1) AT5G46700 133 / 2e-37 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT2G19580 129 / 4e-36 TET2 tetraspanin2 (.1) AT4G23410 129 / 6e-36 TET5 tetraspanin5 (.1) AT5G60220 124 / 2e-33 TET4 tetraspanin4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029562 [exp] 459 / 2e-165 AT1G63260 408 / 1e-145 tetraspanin10 (.1.2.3) Lus10023216 [exp] 166 / 4e-50 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10008891 [exp] 166 / 6e-50 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 160 / 8e-48 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10017336 [exp] 152 / 1e-44 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10015494 [exp] 151 / 3e-44 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10001668 [exp] 145 / 4e-42 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10041411 [exp] 142 / 7e-42 AT4G23410 257 / 5e-87 tetraspanin5 (.1) Lus10008563 [exp] 137 / 9e-39 AT2G19580 411 / 1e-146 tetraspanin2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107200 [exp] 388 / 2e-137 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3) Potri.003G093000 [exp] 155 / 5e-46 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G177900 [exp] 152 / 8e-45 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.001G141400 [exp] 151 / 2e-44 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.018G099800 [exp] 150 / 4e-44 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.010G220300 [exp] 148 / 3e-43 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.015G055700 [exp] 148 / 5e-43 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.008G041600 [exp] 146 / 2e-42 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.009G015100 [exp] 130 / 4e-36 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.006G150400 [exp] 125 / 2e-34 AT2G19580 367 / 5e-129 tetraspanin2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10002230 pacid=23172021 polypeptide=Lus10002230 locus=Lus10002230.g ID=Lus10002230.BGIv1.0 annot-version=v1.0 ATGGCGAGGGAGGAAATGGAGCGGATGGGAACCAGCAACTTCATCATTCGATGGGTTAATTTCCTCACTATGATATTAGCCTTTTGCATTGTGATATATG GGGTTTGGATGAGCACTCATCATGACAGCTGCAAAAAATCCCTCACCCTCCCTATCTTATTCCTTGGTGCTTTCATTTTTCTAATCTCCATAATTGGGTT CTTGGGAGCGTGGAAGAACAACTCCATTCTATTATGGCTTTATCTGATTCTGCTGTGCATTATCTTGGTGGCCATTCTGGTTTTCACGGTGTTGGCGTTC ATTGTGACAAACAATGGATCTGGGCATAGCGTGTCTGGTTTAAGGTACAAAGAGTACCAGCTTCAGGATTACAGTCCTTGGTTTCTTAGACAGCTGAACA ACACAAATCACTGGAAGAGGCTGAAGAGTTGCCTGGTGAAATCTGATGATTGCAACCACCTATCCAGGAAATATAGGACACTCAAGCATTACAAGTCAGC TAAGTTATCCTCCATTGAAGCTGGTTGCTGTCGGCCACCATCCGAATGTGGCTATCCTGCTGTCAATGCTTCATTCTACGACTTGAGCTTTCATCCCGCG AGCTCGAACAAGGATTGCAAGCTTTACAAGAACACCAAGGCCATCAAGTGCTACAACTGTGACTCATGCAAGGCAGGAGTTGCTCAATACATGAAAACAG AATGGAGAGTGGTCGCAATCTTTAACCTTGTCCTGTTTGTTGTTCTGTCTACGATCTACTTCGTTGGATGCTGCGCTAGGAGGAATGCATCAAGGGTTAG CACGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10002230 pacid=23172021 polypeptide=Lus10002230 locus=Lus10002230.g ID=Lus10002230.BGIv1.0 annot-version=v1.0 MAREEMERMGTSNFIIRWVNFLTMILAFCIVIYGVWMSTHHDSCKKSLTLPILFLGAFIFLISIIGFLGAWKNNSILLWLYLILLCIILVAILVFTVLAF IVTNNGSGHSVSGLRYKEYQLQDYSPWFLRQLNNTNHWKRLKSCLVKSDDCNHLSRKYRTLKHYKSAKLSSIEAGCCRPPSECGYPAVNASFYDLSFHPA SSNKDCKLYKNTKAIKCYNCDSCKAGVAQYMKTEWRVVAIFNLVLFVVLSTIYFVGCCARRNASRVSTKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	0	1
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	1.4	0.9243
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	4.0	0.9053
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	4.2	0.8663
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	4.2	0.8956
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042203 [exp]	5.5	0.8435
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	6.0	0.8567
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	6.1	0.8114
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	6.9	0.8592
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	7.2	0.8450
					Lus10035688 [exp]	8.0	0.8730

Compare expression of checked genes

Lus10002230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.