Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20330 258 / 6e-86 Transcription initiation factor TFIIE, beta subunit (.1) AT4G21010 218 / 4e-70 Transcription initiation factor TFIIE, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029563 [exp] 464 / 5e-167 AT4G20330 273 / 2e-91 Transcription initiation factor TFIIE, beta subunit (.1) Lus10005100 [exp] 280 / 1e-94 AT4G20330 315 / 2e-108 Transcription initiation factor TFIIE, beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107500 [exp] 312 / 6e-107 AT4G20330 351 / 2e-122 Transcription initiation factor TFIIE, beta subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002233 pacid=23172029 polypeptide=Lus10002233 locus=Lus10002233.g ID=Lus10002233.BGIv1.0 annot-version=v1.0 ATGGATTATAAGAACAAATCGGATAAGTTCAACAAACAGGCGGAGATTAAGAGCATGGGTTCTAAAGCTGGATCGTCGAGCAATTCGTCAGTTTCGAAAT CCGGGGGTGGCGCTGTATTTGCATCTACCAACGGGAGAAATGCTGCTCCTGGTATTAAGTTCTCTAATGATACGCAAAGGCTTCAGCATATCAACAGTAT TCGAAAGGGTCCCGTTGGGAAGCAGCTGAAGCGTGTTATAGAGCTCCTGCTCAAGGAAAGGCGTGCCTACACTCCAGAGCAGATAAATGAAGCCTGTTAC GTTGACGTTAGATCCAACAAGGAACTCTTTGACAGTTTGAAGGCAAATCCAAAAGTGAACTACGATGGAAGGAGTTTCTCCTATAAGGCGAGCCACTTTT CGAATCCCTTACAGTCGACACATAACTTGCTCAACAAGGAAGAATTACTTAAACTGATACAGAAGTGTGTAGAGGGAATGGCGGTTATTGAGCTTAAGGA TGCATACCCTCGCGTAATGGAGGACTTACAGGAGCTAAAAAGTGCAGGCAAGATTTGGCTGATGTCAAACAACGATTCAAAAGAGGACATTGCCTATCCT AATGACCCTAAGACAGCCATCAAGGTGGATGATGAGCTTAAACTGCTCTTTCGAGATATTCCACTGTCTCGTGACTTTCTCGACATTGAGAGGGACCTGC AGAAGAACGGGATGAAGCCTGCTACAGACACGGCGAAGAGGAGAGCAGCTGCACAAGTGGATGGTATTCCTACGAAACCGAAGACAAAGAAGAGCAAGAC TGACATTGGCAAGAGGGTTAAGCTCACCAATACACATCTTCCGGAGCTTTTCAAGAGGTCATGA
AA sequence Show only first row Show all	>Lus10002233 pacid=23172029 polypeptide=Lus10002233 locus=Lus10002233.g ID=Lus10002233.BGIv1.0 annot-version=v1.0 MDYKNKSDKFNKQAEIKSMGSKAGSSSNSSVSKSGGGAVFASTNGRNAAPGIKFSNDTQRLQHINSIRKGPVGKQLKRVIELLLKERRAYTPEQINEACY VDVRSNKELFDSLKANPKVNYDGRSFSYKASHFSNPLQSTHNLLNKEELLKLIQKCVEGMAVIELKDAYPRVMEDLQELKSAGKIWLMSNNDSKEDIAYP NDPKTAIKVDDELKLLFRDIPLSRDFLDIERDLQKNGMKPATDTAKRRAAAQVDGIPTKPKTKKSKTDIGKRVKLTNTHLPELFKRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20330			Transcription initiation facto...		Lus10002233 [exp]	0	1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10014363 [exp]	1.0	0.9365
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	3.7	0.9228
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	5.7	0.9160
AT1G50670			OTU-like cysteine protease fam...		Lus10040075 [exp]	5.7	0.8857
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	7.7	0.9135
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	8.8	0.9099
AT4G27120			unknown protein		Lus10011161 [exp]	9.0	0.9189
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Lus10025889 [exp]	13.0	0.8886
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	14.1	0.9036
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	14.5	0.9082

Compare expression of checked genes

Lus10002233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.