Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59380 43 / 0.0003 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT3G46580 42 / 0.0003 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029564 [exp] 367 / 9e-125 AT5G59380 46 / 1e-05 methyl-CPG-binding domain 6 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002234 pacid=23172018 polypeptide=Lus10002234 locus=Lus10002234.g ID=Lus10002234.BGIv1.0 annot-version=v1.0 ATGAAGTATCATCGTCGTCCTACATGGTTGCCTCTTGATTGGACCGTCGAAATAAAGTTTGTGCAGAAGGGTCCGAGTCGCGGTAGCACTTATAAGTGCT ACACAGAAACAGCAACTGGGAAAAGGCTGTACTCAAGGCCAAAGGTGCTTGCATATCTCCTCAAGTGTGGCAAGCTCTACACTGGTAACACCTCTCAACC ACAGGTACCACCATATGTAGCTAATGTACAGCAGCAGCAGCAGCAGAAACCAGTAGTTATTGCTCCTGCTCCATCTGCATTAACAAAAGATGAGTGGAAT AAATTTGCAGCAATCTACAACACTACTGTTTCTGGAGATGAGCGATTCCCTCCCCATCAAAATGGCTTTGTTCAACCTGTTATTAACTCAACTCCTCGGA AAGTATGGAATGTTCCCGACATGGAGGACGATGATGATCGTGGCAAAGTAATCATAATGAGCTCTTCCGAAATGGAGAGCTTAATGGATGAGATGCTGAG TACTGCAGCAGCAGAGCAACAAGCTCCGGCTGAGTTGGCTAAAGCCAATTCTCAGCCGAAGAAAAGAGTTGCTGAGGCTGAACCTGAGCAGCTTCAGATG CTTTTGGCAGACAATGCTCCTCCTAGGAAGACTGGACCACGGTCAGCTCGAAAGGCCAGACGTTACGGAAACATCGACAACAATGTTGTTGTTGTTCCAG CAGCCAATTCTGAAACTAATAAGCTTGCTCCTCCAGGAAACTTGGATCAGGTTGGTGATATGGAGAATGTCAATGGTCCTCTTATGGAGATCGACAAGGT CGAAAAGCCTGTCGAGCCTTCTGCTGTGGAGAATGTGAGTGGTCCTCTTATGGACACCAACAAGGTCGAAAAGCCTGTCGAGCCTTCTGCTGTGGAGAAT GTGAGTGGTCCTCTTATGGACACCAACAAGGTCGAAAAGCCTGTCGAGCCTTCTGCTGTGGAGAATGTGAGTGGTCCTCTTATGGACACCAACAAGGTCG AAAAGCCTGTCGAGCCTTCTGCTGTGGAGAATGTGAGTGGTCCTCTTATGGACACCAACAAGGTCGAAAAGCCTGTCGAGCCTTCTGCTGTGGAGAATGT GAGTGGTCCTCTTATGGACACCAACAAGGTCGAAAAGCCTGTCGAGCCTTCTGCTGTGGAGAATGTGAGTGGTCCTCTTATGGACACCAACAAGGTCGAA AAGCCTGTCGAGCCTTCTGCTGTGGAGAATGTGAGTGGTCCTCTTATGGACACCAACAAGGTCGAAAAGCCTGTCGAGCCTTCTGCTGTGGAGAATGTGA GTGGTCCTCTTATGGACACCAACAAGGTCGAAAAGCCTGTCGAGCCTTCTGCTGTGGAGAATGTGAATAATGGTCCTCTTATGGACATAGACAAGGTCGA AAAGCCTATCGAGCCTTCTGCTGTGGAGAATGTGAATAATGGTCCTCTTATGGACATAGACAAGGTCGAAAAGCCTATCGAGCCTTCTGCTGTGGAGAAT GTGAATAATGGTCCTCTTATGGACATAGACAAGGTCGAAAAGCCTATCGAGCCTTCTGCTATGGAGAATGCGGTTGAAAAATAG
AA sequence Show only first row Show all	>Lus10002234 pacid=23172018 polypeptide=Lus10002234 locus=Lus10002234.g ID=Lus10002234.BGIv1.0 annot-version=v1.0 MKYHRRPTWLPLDWTVEIKFVQKGPSRGSTYKCYTETATGKRLYSRPKVLAYLLKCGKLYTGNTSQPQVPPYVANVQQQQQQKPVVIAPAPSALTKDEWN KFAAIYNTTVSGDERFPPHQNGFVQPVINSTPRKVWNVPDMEDDDDRGKVIIMSSSEMESLMDEMLSTAAAEQQAPAELAKANSQPKKRVAEAEPEQLQM LLADNAPPRKTGPRSARKARRYGNIDNNVVVVPAANSETNKLAPPGNLDQVGDMENVNGPLMEIDKVEKPVEPSAVENVSGPLMDTNKVEKPVEPSAVEN VSGPLMDTNKVEKPVEPSAVENVSGPLMDTNKVEKPVEPSAVENVSGPLMDTNKVEKPVEPSAVENVSGPLMDTNKVEKPVEPSAVENVSGPLMDTNKVE KPVEPSAVENVSGPLMDTNKVEKPVEPSAVENVSGPLMDTNKVEKPVEPSAVENVNNGPLMDIDKVEKPIEPSAVENVNNGPLMDIDKVEKPIEPSAVEN VNNGPLMDIDKVEKPIEPSAMENAVEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10002234 [exp]	0	1
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10012110 [exp]	16.9	0.7167
AT3G30390			Transmembrane amino acid trans...		Lus10007716 [exp]	19.8	0.6948
					Lus10027784 [exp]	32.2	0.6677
AT4G23410		TET5	tetraspanin5 (.1)		Lus10036518 [exp]	33.2	0.6563
AT3G07800			Thymidine kinase (.1)		Lus10006394 [exp]	37.3	0.6571
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10008931 [exp]	38.8	0.6366
AT1G53210			sodium/calcium exchanger famil...		Lus10017657 [exp]	39.6	0.6242
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10030206 [exp]	48.9	0.5566
AT5G16610			unknown protein		Lus10000454 [exp]	60.0	0.5936
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000852 [exp]	61.0	0.6105

Compare expression of checked genes

Lus10002234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.