Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G55470 103 / 7e-29 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G00467 83 / 2e-20 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G34150 64 / 7e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G47710 57 / 6e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G05500 58 / 2e-10 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G21160 55 / 2e-09 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT1G03370 53 / 9e-09 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT4G05330 52 / 2e-08 AGD13 ARF-GAP domain 13 (.1) AT3G07940 50 / 7e-08 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029565 [exp] 296 / 7e-105 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040291 [exp] 110 / 1e-31 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10023410 [exp] 76 / 5e-18 AT3G55470 149 / 5e-47 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10014780 [exp] 72 / 3e-16 AT4G00467 168 / 1e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027875 [exp] 69 / 1e-14 AT4G34150 246 / 3e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 67 / 2e-13 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002825 [exp] 65 / 3e-13 AT4G34150 243 / 5e-81 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 66 / 4e-13 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 66 / 5e-13 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155600 [exp] 197 / 4e-66 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203000 [exp] 129 / 4e-39 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203100 [exp] 107 / 2e-30 AT3G55470 163 / 3e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G084100 [exp] 91 / 3e-23 AT4G00467 194 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G301900 [exp] 68 / 2e-14 AT4G34150 204 / 8e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G097900 [exp] 67 / 4e-14 AT4G34150 213 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G123200 [exp] 62 / 4e-12 AT4G34150 185 / 3e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 62 / 7e-12 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 60 / 4e-11 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.018G124000 [exp] 59 / 1e-10 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10002235 pacid=23172014 polypeptide=Lus10002235 locus=Lus10002235.g ID=Lus10002235.BGIv1.0 annot-version=v1.0 ATGCCTCAAGGGGTTCTCGAAGTCCTACTCGTCAGCGCCAAGGGCCTGGAGAACACCGATTTCCTCAATGACATGGATCCTTACGTGATCCTGACTTGTC GCACTCACGAGCAGAAAAGCAGCGTCGCTTCAGGAAAGGGGAGTGAGCCAGAATGGAATGAGAATTTCGTGTTCACTGTATCAGAAGGTGCCAGCCAGCT CTGCTTGAAGATCATGGACAGTGATGCCGGCACTGCTGATGATTTCGTCGGAGAAGCCACAATTCCATTGGATCCAGTGTTTGATGAAGGAAGCATTCCT CCAGCTTCATATAATGTGGTGAAGGATGGTGAATACAAAGGCTCCATCAGAGTTGGCCTCACCTACAAAAGAGAGGAAAATCGAAGCCGCGGAATGGAGG AAAGCTTCGGAGGATGGAAACAGTCTGAAGAATCATACTAA
AA sequence Show only first row Show all	>Lus10002235 pacid=23172014 polypeptide=Lus10002235 locus=Lus10002235.g ID=Lus10002235.BGIv1.0 annot-version=v1.0 MPQGVLEVLLVSAKGLENTDFLNDMDPYVILTCRTHEQKSSVASGKGSEPEWNENFVFTVSEGASQLCLKIMDSDAGTADDFVGEATIPLDPVFDEGSIP PASYNVVKDGEYKGSIRVGLTYKREENRSRGMEESFGGWKQSEESY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	0	1
AT1G63220			Calcium-dependent lipid-bindin...		Lus10029565 [exp]	1.0	0.8965
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	2.0	0.8428
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	3.5	0.8393
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	4.9	0.8385
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	7.4	0.8060
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	8.1	0.8022
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	8.8	0.8221
AT1G31940			unknown protein		Lus10010425 [exp]	10.9	0.8208
AT2G41150			unknown protein		Lus10022403 [exp]	11.6	0.8292
AT5G60160			Zn-dependent exopeptidases sup...		Lus10022460 [exp]	12.5	0.7832

Compare expression of checked genes

Lus10002235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.