Plant FIBer expression Database

Lus10002237 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037540
[exp]
116 / 9e-32 ND 40 / 7e-04
Lus10011453
[exp]
113 / 4e-31 ND 36 / 0.008
Lus10037542
[exp]
101 / 4e-26 ND /
Lus10011452
[exp]
97 / 5e-24 ND /
Lus10037541
[exp]
92 / 1e-22 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1)
Lus10025781
[exp]
52 / 6e-08 ND /
Lus10038294
[exp]
50 / 4e-07 ND 42 / 4e-04
Lus10025782
[exp]
50 / 6e-07 ND /
Lus10025807
[exp]
49 / 1e-06 ND 39 / 0.002
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04043 PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence
>Lus10002237 pacid=23172033 polypeptide=Lus10002237 locus=Lus10002237.g ID=Lus10002237.BGIv1.0 annot-version=v1.0
ATGGGTACTCATGTAGCTATGATGTTGATCACCCTAACCACCTCATCTTTCTTTCTTCTCGCTATCTCGCAGTCTCCGGCAGCATCTCCATCAGGATCAT
CAGCATCAGCTTCGTCAGGATCTAATACAGCATCTCCAGCAGGATCCCCTACACCATCTGTGTACCCGCAGTTCAAAGAGTTGATATGCTCGAACTACGA
TCCAAAGATGGTAGCCGAGGACATCAAGCCAGACTCGCCACTGACCACCTTGTGCAACACGAAAGATAACGCAGCCAAGTGCCTTGATTTCTTGGGGAAC
AAGCCAGACGCTGACCCTTCGTACGCCATCAAGACCGATGTCAAGGCCATAAGCGAAATGATCAAGGTACAAGCCACCATCGCTAAGAGGAACAAGAACC
CCGAGCTGAAGGTCCCCTTCGAGACGTGCCATACGGAGTTCAACAACGCCGCCAATACCCTGGACGACGTTGTGGCCGCCTGTGACCAGAAGATCACCAA
GCAGGCGACCGCGTTGCTTGGTGATGTCTTGAAGAACCTCCAGTCGTGCAATCAGGCGTTCCAGGCTGCGCCGGACCTCGAGCAGGGTTGGTCGGTCAGG
GACACGAACGAGGACGCACTTGCGGCTATCACCAAGATCCTCTCAGTTTCCAAGAGATTCAACGAGTGA
AA sequence
>Lus10002237 pacid=23172033 polypeptide=Lus10002237 locus=Lus10002237.g ID=Lus10002237.BGIv1.0 annot-version=v1.0
MGTHVAMMLITLTTSSFFLLAISQSPAASPSGSSASASSGSNTASPAGSPTPSVYPQFKELICSNYDPKMVAEDIKPDSPLTTLCNTKDNAAKCLDFLGN
KPDADPSYAIKTDVKAISEMIKVQATIAKRNKNPELKVPFETCHTEFNNAANTLDDVVAACDQKITKQATALLGDVLKNLQSCNQAFQAAPDLEQGWSVR
DTNEDALAAITKILSVSKRFNE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10002237
[exp]
0 1
AT3G11480 BSMT1, ATBSMT1 S-adenosyl-L-methionine-depend... Lus10032299
[exp]
1.0 0.9983
AT1G68630 PLAC8 family protein (.1) Lus10009036
[exp]
1.4 0.9873
AT1G62935 unknown protein Lus10009297
[exp]
2.4 0.9622
AT1G64870 unknown protein Lus10041678
[exp]
2.8 0.9577
AT3G29970 B12D protein (.1) Lus10035132
[exp]
3.2 0.9363
AT3G26880 Plant self-incompatibility pro... Lus10038164
[exp]
5.7 0.9112
Lus10010306
[exp]
5.9 0.9277
AT5G60440 MADS AGL62 AGAMOUS-like 62 (.1) Lus10028473
[exp]
6.5 0.8734
AT2G29670 Tetratricopeptide repeat (TPR)... Lus10043203
[exp]
6.6 0.8385
AT3G11080 AtRLP35 receptor like protein 35 (.1) Lus10004307
[exp]
7.3 0.8627

Lus10002237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.