Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47740 181 / 7e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT5G57035 66 / 1e-11 U-box domain-containing protein kinase family protein (.1) AT5G65500 60 / 8e-10 U-box domain-containing protein kinase family protein (.1) AT4G25160 57 / 5e-09 U-box domain-containing protein kinase family protein (.1) AT1G16760 56 / 2e-08 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G61410 51 / 4e-07 unknown protein AT3G49060 48 / 7e-06 U-box domain-containing protein kinase family protein (.1.2) AT2G24370 44 / 0.0001 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 44 / 0.0001 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G45920 43 / 0.0002 U-box domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029567 [exp] 409 / 9e-143 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10043338 [exp] 117 / 2e-31 AT5G47740 128 / 2e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10019487 [exp] 116 / 7e-31 AT5G47740 128 / 3e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10036362 [exp] 73 / 6e-14 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 70 / 7e-13 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10040825 [exp] 68 / 3e-12 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10016557 [exp] 67 / 5e-12 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10025715 [exp] 59 / 3e-09 AT5G65500 655 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10017145 [exp] 56 / 1e-08 AT5G35380 207 / 3e-60 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003900 [exp] 224 / 4e-72 AT5G47740 215 / 3e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.012G084700 [exp] 137 / 8e-39 AT5G47740 124 / 1e-34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G083100 [exp] 129 / 1e-35 AT5G47740 112 / 5e-30 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.009G030400 [exp] 76 / 4e-15 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 73 / 4e-14 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 73 / 4e-14 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 72 / 1e-13 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 68 / 2e-12 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 65 / 3e-11 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 49 / 2e-06 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10002238 pacid=23172024 polypeptide=Lus10002238 locus=Lus10002238.g ID=Lus10002238.BGIv1.0 annot-version=v1.0 ATGGCGGAGTTGTCGACGGCGACGGCACATCCGAGACCAGACCCACAAACTGGCGCACACGATTTCCAATCCAAGGAGGTCTACTACTACGCCGAACTCT ACGGCGGCGGCAACAGAGCGTGGGAAATCGAAGAGGAGGAGGACGACGAGCTGTTCGAGATCCGTCACGGCGAAGAAGGACGGTCTCCGCCGTTGGCGAG CATCAAGGAGGAGATCACCCCGGCGGATGCCGGGAGTGCGGAAGTCAACGACGACGATGACTGCTTGTACGTCGGAGTAGGGAAGGGAGAATCCAGCGCC GACGCGGTGGCTTGGGCGTCGAGGAAAGCCGCTACCGCCGACGCCACCTTGTACCTCATCCACGTCTACCCTGAAGTTCGCCACATTCCATCTCCCTTGG GTAAGCTTCCAAAAAGTCAAGTGAGTCCAGAACAAGTGGAGAGCTACATGGCTCAGGAACGAGGCAAGCGAAGACTACTCCTTCAGACCTTCATCAACCA GTGCTCTACTTCCAATGTGAAGGTAGAGACAATCCTGATAGAGAGCGACACAGCGGGGAAGGCGATTCTGGACCTGATCCCAATCCTCAACATCAGGAGG CTTGTGCTAGGAACCAACAAATCCAACGTCAAGAAACTCAAGCACAGGAAAGGAAACACAAACATCGCCGATCAAGTGATCCTCAGCGCACCGGAGGGTT GCGAGATCAGCATCGTATGCCAAGGTCAGCAAATCATGACCGTTGATGGCGGCACGGTTATTTCATCGTCGACTACCGGTGTATCGTCTCCTTCTCCTTC CCCGCTTCGTTTGGGCGGTAGCAACGGCAACCACAACAAGGCAATGGAGCTGCCGGCAGCAGCGTCAAACAGTAATAATGTCGCCGCCGGTGAAGCTTTT GCATGCATGTGTTTTAAGTCTCCAAGGGTGACCTCGTAA
AA sequence Show only first row Show all	>Lus10002238 pacid=23172024 polypeptide=Lus10002238 locus=Lus10002238.g ID=Lus10002238.BGIv1.0 annot-version=v1.0 MAELSTATAHPRPDPQTGAHDFQSKEVYYYAELYGGGNRAWEIEEEEDDELFEIRHGEEGRSPPLASIKEEITPADAGSAEVNDDDDCLYVGVGKGESSA DAVAWASRKAATADATLYLIHVYPEVRHIPSPLGKLPKSQVSPEQVESYMAQERGKRRLLLQTFINQCSTSNVKVETILIESDTAGKAILDLIPILNIRR LVLGTNKSNVKKLKHRKGNTNIADQVILSAPEGCEISIVCQGQQIMTVDGGTVISSSTTGVSSPSPSPLRLGGSNGNHNKAMELPAAASNSNNVAAGEAF ACMCFKSPRVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47740			Adenine nucleotide alpha hydro...		Lus10002238 [exp]	0	1
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10010395 [exp]	1.0	0.8715
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	6.7	0.8661
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	8.0	0.8621
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	12.0	0.8146
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	12.1	0.8667
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	13.0	0.8176
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	15.0	0.8523
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	19.3	0.8376
AT4G21570			Protein of unknown function (D...		Lus10018447 [exp]	22.4	0.8466
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	22.8	0.8111

Compare expression of checked genes

Lus10002238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.