Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 88 / 6e-19 F-box/RNI-like superfamily protein (.1) AT3G03040 78 / 2e-15 F-box/RNI-like superfamily protein (.1) AT3G18150 77 / 2e-15 RNI-like superfamily protein (.1) AT1G66310 76 / 7e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G42730 76 / 9e-15 F-box family protein (.1.2) AT1G66290 73 / 4e-14 F-box/RNI-like superfamily protein (.1) AT3G28410 73 / 7e-14 F-box/RNI-like superfamily protein (.1) AT1G16930 72 / 7e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G38390 72 / 1e-13 F-box/RNI-like superfamily protein (.1) AT5G02700 71 / 4e-13 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024696 [exp] 404 / 1e-140 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10024695 [exp] 349 / 4e-119 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 221 / 2e-69 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 212 / 3e-65 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 207 / 2e-63 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 205 / 6e-63 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 196 / 3e-59 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 192 / 7e-58 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10020748 [exp] 189 / 6e-57 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 140 / 4e-38 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 117 / 7e-30 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 112 / 8e-28 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 100 / 1e-23 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 97 / 4e-22 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 96 / 4e-22 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 64 / 5e-11 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 63 / 1e-10 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 60 / 1e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024600 [exp] 58 / 5e-09 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10002239 pacid=23172032 polypeptide=Lus10002239 locus=Lus10002239.g ID=Lus10002239.BGIv1.0 annot-version=v1.0 ATGGAGGATGCCTTACTGGAAACTGACTGGTTAAGTAATCTTCCCGACTCAGTTCTGCATCATATCCTTTCATTTCTAGAAACCAAATTGGCCGTTCAAA CTTCTGTATTATCCCGGCGGTGGAGAAATGCGTGGAAGGATGTCCCGACTCTCGACATTCGTAGCGAATCCTTCAGAGAGTATGCAAGCTTCAGAACATA CGTGGACAAGGTTCTGTCCCTTCGAAATCCGCTTAGTCTCCAAAAGATCACCTTGATTGACGAAGGGAATCCGGATGTTCGCGAAGCTAGCCTGTTAGCA AGGGTCGTCGAGTATGGCTTGTCCCACGATGCTCAACATTTTCTCATTGACCTGGAGAATAGTGTCCGCTGGAAAGAAGACACTGAATACTTTTTCTCTG AATTGTTTGGCACCGTCCTTGATTGCAATCTTAGAACCCTAAAACTAGACACTATGGTCCTTGATGTCAATGTCGGGTTTCGATCTTCTGGTTTCTGGAT GCTGACAAAGTTGGAGCTGATCGAATGCATGTTCTGGTCCGATGATGAAGAGTATGACCCTTTCTCTGAGTTTCCATGTCTGGAGCATTTGGTCTTGGAA AGTTCGTCCTTGGGGGACTATTTCAGTTGCGATCGTAGACTCAGGATCTCCGGACTCAGACTGCTTAGTCTGAGTGTCACGGATACTTATTTCACGGACC TCGGCATACACGCACCGAGACTCAAACATTTCTATTTCCATAAGTTGTGGGGCTTCGTGGAATTCACTGAGATGAACCTTCCTTCGCTCGAGAATGCTGA GATTTCAGTGGCTGATTTCGCCGGTTCTGATGAGGATTATGCTGAGTACGCCAAAGATGGTATGATCTCCTTGCTCCAGGGGCTGAGTAATGCAAAGACT CTTACTTTGTGCTGCTTTACGATTGAGGTATTGAATCATATTCCCGAGTTTCCGAAACAACCCTCTCCTTTTACGAGACTAAAGACTTTGAGCTTGGGGA GTCACGATTTACCGGATGCAGCGATCGACTACTTTGTTAAAGGTTCTTCTGGTGCAAAACCGGTTGTCAAGTTTGAATGA
AA sequence Show only first row Show all	>Lus10002239 pacid=23172032 polypeptide=Lus10002239 locus=Lus10002239.g ID=Lus10002239.BGIv1.0 annot-version=v1.0 MEDALLETDWLSNLPDSVLHHILSFLETKLAVQTSVLSRRWRNAWKDVPTLDIRSESFREYASFRTYVDKVLSLRNPLSLQKITLIDEGNPDVREASLLA RVVEYGLSHDAQHFLIDLENSVRWKEDTEYFFSELFGTVLDCNLRTLKLDTMVLDVNVGFRSSGFWMLTKLELIECMFWSDDEEYDPFSEFPCLEHLVLE SSSLGDYFSCDRRLRISGLRLLSLSVTDTYFTDLGIHAPRLKHFYFHKLWGFVEFTEMNLPSLENAEISVADFAGSDEDYAEYAKDGMISLLQGLSNAKT LTLCCFTIEVLNHIPEFPKQPSPFTRLKTLSLGSHDLPDAAIDYFVKGSSGAKPVVKFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	0	1
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	2.2	0.8634
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	3.9	0.8237
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	5.7	0.8297
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10042183 [exp]	6.2	0.7918
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	6.6	0.7903
AT3G14750			unknown protein		Lus10038143 [exp]	7.5	0.8336
AT5G10320			unknown protein		Lus10000634 [exp]	7.7	0.8158
					Lus10024697 [exp]	7.9	0.8168
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	9.2	0.8082
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	11.5	0.8255

Compare expression of checked genes

Lus10002239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.