Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005187 [exp] 77 / 4e-16 ND / Lus10005188 [exp] 71 / 1e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002240 pacid=23172017 polypeptide=Lus10002240 locus=Lus10002240.g ID=Lus10002240.BGIv1.0 annot-version=v1.0 ATGGCCTCTACTCTCACTATGACCACCATTGCTACCCTATTTGCTCCTGCATGTCCTACTGCTGCTTCTTCGAAAACCAGACCGCCGATGGTAGCATCGT CGGCAGTTGCTCGCGTATCCAACTCCAAAACTCTCGTCTTTCCCGCCGAGAAAAATACGACAACCAAGTCGTTTGTTGGTCCTGTCTCTCGAAAGGGCGA CGCTAGCCACTACCACTGGCCTGTGTTAGGAAAGGGCCATGAGGAGGAGGAAGATGCGAGCCTCTTCAACTATTATGTGTTCGGAAAGGCCGGTCAGGAG GTGGGCGATGCGAGCCTCTTCAACTATTATGTGTTCGGAAAGGGCCATGAGGAGGAGGGAGATGCGAGCCTCTTCAACTATTATGTGTTCGGAAAGGGCC ATGAGGAGGAGGGAGATGCGAGCCTCTTCAACTATTATGTGTTCGGAAAGGCCGGCCAGGAGGAGGGCGATGCTAGCCTCTTCAACTATTATGTGTTCGG CAAGGGCCATGAGGAGGAGGGCGATGCTAGCCTCTTCAACTATTATGTGTTCGGCAAGGCTGGTCAGGAGGTGGACGATGCGAGCCTCTTCAACTATTAT GTGTTCTGCAAGGGCCACGAGGAGGAGGCCGATGCCAGCCTCTTCAACTATTATGTGTTCGGCAAGGGCCATGAGGAGGAGGCCGATGCTAGCCTCTTCA ATTATTATGTGTTTGGCAAGGCCGGTCAAGAGGAGGGCGATGCTAGCCGCTACCATTGGCCTTGCTTCGGCAAGACCATCTAG
AA sequence Show only first row Show all	>Lus10002240 pacid=23172017 polypeptide=Lus10002240 locus=Lus10002240.g ID=Lus10002240.BGIv1.0 annot-version=v1.0 MASTLTMTTIATLFAPACPTAASSKTRPPMVASSAVARVSNSKTLVFPAEKNTTTKSFVGPVSRKGDASHYHWPVLGKGHEEEEDASLFNYYVFGKAGQE VGDASLFNYYVFGKGHEEEGDASLFNYYVFGKGHEEEGDASLFNYYVFGKAGQEEGDASLFNYYVFGKGHEEEGDASLFNYYVFGKAGQEVDDASLFNYY VFCKGHEEEADASLFNYYVFGKGHEEEADASLFNYYVFGKAGQEEGDASRYHWPCFGKTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002240 [exp]	0	1
AT5G43370		PHT1;2, APT1, P...	ARABIDOPSIS PHOSPHATE TRANSPOR...		Lus10027631 [exp]	2.8	0.7830
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10001225 [exp]	5.8	0.7064
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	8.0	0.7795
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	9.8	0.7795
					Lus10010383 [exp]	11.3	0.7795
					Lus10000380 [exp]	12.6	0.7795
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	13.9	0.7783
					Lus10009632 [exp]	15.0	0.7757
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	16.0	0.7631
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	18.0	0.7614

Compare expression of checked genes

Lus10002240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.