Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24940 172 / 1e-57 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT5G52240 107 / 4e-31 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2) AT3G48890 108 / 8e-31 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT4G14965 84 / 5e-21 ATMAPR4 membrane-associated progesterone binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029567 [exp] 208 / 2e-67 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10038356 [exp] 111 / 2e-32 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10014988 [exp] 106 / 5e-30 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038868 [exp] 105 / 1e-29 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10005746 [exp] 105 / 2e-29 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10027449 [exp] 105 / 2e-29 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10034799 [exp] 100 / 2e-29 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1) Lus10018026 [exp] 82 / 3e-20 AT4G14965 361 / 3e-127 membrane-associated progesterone binding protein 4 (.1) Lus10042022 [exp] 72 / 2e-16 AT4G14965 357 / 5e-126 membrane-associated progesterone binding protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016900 [exp] 174 / 3e-58 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.006G266200 [exp] 162 / 1e-53 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.015G139800 [exp] 113 / 7e-33 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.012G137800 [exp] 110 / 1e-31 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G125100 [exp] 108 / 3e-31 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.016G022700 [exp] 81 / 1e-19 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10002241 pacid=23172028 polypeptide=Lus10002241 locus=Lus10002241.g ID=Lus10002241.BGIv1.0 annot-version=v1.0 ATGGAGTTCACGGCGGCGCAGCTGAGTCAGTACAACGGCACCGACTCATCCAAGCCAATCTACGTGGCGATCAAGGGCCGCGTCTTTGACGTCACAACCG GCAACTCCTTCTACGGCCCCGGCGGCTCCTACTCCATGTTCGCCGGCAAGGACGCTAGCAGAGCTCTGGCCAAGATGAGCAAGGACGACGCTGACGTTAT CCCTTCCCTCCACGGACTGTCCGAGAAGGAGCTCGGCGTCCTCGCCGATTGGGAGAAGAAGTTCGAAGCTAAGTACCCTGTCGTTGGCCGCGTCGTCTCC TAA
AA sequence Show only first row Show all	>Lus10002241 pacid=23172028 polypeptide=Lus10002241 locus=Lus10002241.g ID=Lus10002241.BGIv1.0 annot-version=v1.0 MEFTAAQLSQYNGTDSSKPIYVAIKGRVFDVTTGNSFYGPGGSYSMFAGKDASRALAKMSKDDADVIPSLHGLSEKELGVLADWEKKFEAKYPVVGRVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	0	1
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	1.0	0.8994
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	4.0	0.8509
AT5G47740			Adenine nucleotide alpha hydro...		Lus10029567 [exp]	4.0	0.8337
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	6.0	0.8377
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	6.5	0.8153
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	8.7	0.8253
AT5G51040			unknown protein		Lus10043024 [exp]	11.5	0.8070
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10011053 [exp]	12.4	0.7841
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	15.3	0.7642
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	16.0	0.7990

Compare expression of checked genes

Lus10002241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.