Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 533 / 5e-180 ARA12 Subtilase family protein (.1) AT1G04110 503 / 4e-168 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT3G14067 491 / 2e-163 Subtilase family protein (.1) AT3G14240 481 / 1e-159 Subtilase family protein (.1) AT4G34980 477 / 3e-158 SLP2 subtilisin-like serine protease 2 (.1) AT2G05920 469 / 2e-155 Subtilase family protein (.1) AT5G51750 469 / 3e-155 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 454 / 2e-149 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 446 / 2e-146 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 437 / 7e-143 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006310 [exp] 1109 / 0 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 1099 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10002244 [exp] 1088 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 1082 / 0 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 1071 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 1069 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 1069 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 1051 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 769 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 822 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 818 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 793 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 758 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 753 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 540 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 528 / 3e-178 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G018900 [exp] 503 / 4e-168 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 493 / 1e-164 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.002G120400 [exp] 492 / 7e-164 AT5G67360 966 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10002242 pacid=23172027 polypeptide=Lus10002242 locus=Lus10002242.g ID=Lus10002242.BGIv1.0 annot-version=v1.0 ATGAAATCCCTTCTGCTAATTTCCCTCACTTTAACTTCTACTTACTACTACTTGTTCTTCTCCACCAAAACTGACTTACAAACTTACATTGTGTTTGTGG AGAAACCAGTAGGTTTCACACAGTCAAGTGATTTACATGGCTGGTACGACAAATTCCTTCCCAGAACTACATTCAGCTCGAAAAAGAAACAGCGTGTGGA GCATTACTATCAAAATGTGATCACAGGCTTTGCTGCTAAGCTTACACCGGAAGAAGCCAAAGCAATGGAGAAGAAGGAAGGGTTTGTGTCAGCAAGAGTC GAGAGATCCTTGTCTCTACATACTACTCACACTCCCGAGTTCTTAGGTCTGCTGCAAAATCAAGGGAGCTATTGGAGCTCTGCACATTTCGGTAGAGGAG TGATCATTGGTGTTATTGATAGTGGCATCAAGCATGATCACCCTTCGTTTGGTGATGAAGGGATGCCTCCACCTCCTGCAAGATGGAAAGGTAAGTGTGA GTTCAACGGGAAGAAGACTTGTAACAACAAGCTTATAGGTGCTAGAAGCTTTGTTTCTCAAGGGGATATCCCGTCGGAAGATACTCTCCATGGGACTCAT ACTGCTGGAGAAGCTGGTGGGATTCCTGTGGAAGGTGCCAATGTGTTTGGACAAGCTAACGGAACTGCGATGGGTATCGCACCGTTTGCCCACTTGGCGA TGTACAAGGTTTGTGGAACTAATTCTGAATGCATGGAGAGTACGGTATTGGCAGCAATTGATGCTGCTATAGATGATGGTGTTGATGTGCTTTCAATGTC ACTTGCACTTCAATATGATAATTTGTATGATGATGTTATTGCATTGGGTGCATTTAGAGCCATTCAAAATGGAATATTTGTTAGCTGCTCAGCTGGCAAC TTAGGACCAAATAGCTCTTCTTTAGTAAATGTGGCACCTTGGATTCTAACCGTTGGAGCAAGTACCATTGATAGGGATATCAGGTCAACAGTGACATTAG GCAATAACGCGCAATTTCATGGCCAATCGAGTTTCCAGCCTAAGGACTTTCTTCAACAGCAATTACCGATCGTTGATGCTGGTGCGAGTATCAATGCATC AACAGCATTTTGTGAAGAAGGGTCACTGAAGAACATTGATGTCAGAGGAAAGATTGTTCTGTGCCAGGTGAGAAGTGTCAATCGGAGCATCATTCGAGGA ATTGAAGTCAAGGAAAATGGTGGAGCAGCCATGATATTGATCAATGGCTTAGAACAGGGCTGCACTACTCAAGCTGAAGCCCATGTCCTTCCTGCATCAA ACGTCAATTACAAAGACGGATTGGCAATCAAAGCTTACTTGAACTCCACGTCATCCCCATCTGCAACAATCTCATTCCAAGGTACTTTGTTCGGAAAGTT GAGTGCTCCACAAGTAGCCTCGTTCTCGTCAAGAGGTCCCAGCAAACAATGCCCCGGGATCCTGAAACCTGACATCATTGGTCCTGGAGTGAGCATTTTA GGTGCTTGGGCATACTCGGTGGACAATTCTACCAATTCATTCAATATAGTCTCGGGAACTTCGATGTCTTGCCCACATCTTAGCGGTGTTGCAGCTGTAA TCAAGGCAATGCATCCAGATTGGTCACCTGCTGCCATAAAGTCAGCAATTTTAACCACTGCTTACACAGTTGACCTTAGTGGCAAGCCAATCTCCAATGA GCAGAATTCTCCTGCTACTGCCTTTGATATGGGTGCTGGCCATGTGAACCCACCAAAAGCTTTGGATCCAGGTTTGATATATGATATCCAACCAGATGAT TACGCTGCGTATATCTGCAGTTTGGGTTACAATGACGCACAAGTAAGAATGATCGTGCAGTGGAAAGTGAAGTGCTCGAACGAATCTTCCATACCCGGTG CTCAACTGAACTACCCTACATTTTATGTCTCTCTGGGTTCTAGTCCACAAACACATACCAGAACAGTCACCAATATTGGCACGCATAACTCGACTTACAG CAGCAAGGTATTCCCACCAGAAGGTGTCGATGTTAAAGTCGAGCCAAGTGAGTTTAAGTTCAACGAGCTGAAAGAGAAAGCAACGTATTCGATAACATTC AACAGGGTCGGAAATGCGACAGGAACTATGAGCCAAGGTTCCTTGGTGTGGTCATCTACTGATGATAGGTACAAAGTTGTGAGCACAATTGCTGTGGTAT TTGTTTGA
AA sequence Show only first row Show all	>Lus10002242 pacid=23172027 polypeptide=Lus10002242 locus=Lus10002242.g ID=Lus10002242.BGIv1.0 annot-version=v1.0 MKSLLLISLTLTSTYYYLFFSTKTDLQTYIVFVEKPVGFTQSSDLHGWYDKFLPRTTFSSKKKQRVEHYYQNVITGFAAKLTPEEAKAMEKKEGFVSARV ERSLSLHTTHTPEFLGLLQNQGSYWSSAHFGRGVIIGVIDSGIKHDHPSFGDEGMPPPPARWKGKCEFNGKKTCNNKLIGARSFVSQGDIPSEDTLHGTH TAGEAGGIPVEGANVFGQANGTAMGIAPFAHLAMYKVCGTNSECMESTVLAAIDAAIDDGVDVLSMSLALQYDNLYDDVIALGAFRAIQNGIFVSCSAGN LGPNSSSLVNVAPWILTVGASTIDRDIRSTVTLGNNAQFHGQSSFQPKDFLQQQLPIVDAGASINASTAFCEEGSLKNIDVRGKIVLCQVRSVNRSIIRG IEVKENGGAAMILINGLEQGCTTQAEAHVLPASNVNYKDGLAIKAYLNSTSSPSATISFQGTLFGKLSAPQVASFSSRGPSKQCPGILKPDIIGPGVSIL GAWAYSVDNSTNSFNIVSGTSMSCPHLSGVAAVIKAMHPDWSPAAIKSAILTTAYTVDLSGKPISNEQNSPATAFDMGAGHVNPPKALDPGLIYDIQPDD YAAYICSLGYNDAQVRMIVQWKVKCSNESSIPGAQLNYPTFYVSLGSSPQTHTRTVTNIGTHNSTYSSKVFPPEGVDVKVEPSEFKFNELKEKATYSITF NRVGNATGTMSQGSLVWSSTDDRYKVVSTIAVVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002242 [exp]	0	1
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	10.5	0.5931
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	15.2	0.6173
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	19.4	0.6072
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	30.0	0.5434
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10019350 [exp]	32.0	0.6022
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	36.6	0.6094
					Lus10031595 [exp]	36.9	0.6125
AT1G75060			unknown protein		Lus10032725 [exp]	48.6	0.5397
AT1G18720			Protein of unknown function (D...		Lus10001646 [exp]	50.9	0.5788
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	58.1	0.5777

Compare expression of checked genes

Lus10002242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.