Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 225 / 9e-67 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 223 / 5e-66 ARA12 Subtilase family protein (.1) AT3G14067 221 / 2e-65 Subtilase family protein (.1) AT5G67090 214 / 5e-63 Subtilisin-like serine endopeptidase family protein (.1) AT5G03620 209 / 1e-60 Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 203 / 6e-59 Subtilase family protein (.1) AT2G05920 202 / 2e-58 Subtilase family protein (.1) AT1G01900 202 / 2e-58 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59130 201 / 3e-58 Subtilase family protein (.1.2) AT5G59810 200 / 2e-57 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029570 [exp] 529 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 529 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 520 / 2e-177 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 503 / 2e-170 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 490 / 6e-169 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10006310 [exp] 476 / 2e-163 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 468 / 2e-160 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 461 / 2e-157 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10002242 [exp] 449 / 5e-153 AT5G67360 555 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 380 / 2e-126 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 381 / 3e-126 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 380 / 5e-126 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 363 / 1e-119 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 342 / 3e-111 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.005G145300 [exp] 235 / 4e-71 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 234 / 6e-70 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.007G045100 [exp] 227 / 2e-67 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.006G141200 [exp] 223 / 7e-66 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.002G256300 [exp] 214 / 1e-62 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10002243 pacid=23172030 polypeptide=Lus10002243 locus=Lus10002243.g ID=Lus10002243.BGIv1.0 annot-version=v1.0 ATGAAAGCCTTACTTCTCATCACATTCTTCTTCTTCTTCTTCTCCTTACAAGAAGCATCAGCTTCTGGAAAAAGCAACTTAGACACTTACATTGTGTTTC TACAGAAACCAGAGAGCCTAGTATCCACACAATCAACTGATTTTGATTTATATTGCTGGTACCAAACATTCCTTCCTGAAACTGTATTAAGCTCAAGTGA AGAACAGCGCATGGTGCATTCATATCGAAATGCGATCACCGGCTTTGCTGCTAAGCTTACACCAGAAGAAGCAAAAGCAATGGAGCAGAAGGAAGGGTTC GTGTCAGCAAGACTTGAGAGAACATTGTCTCTACATACAACTCACACTCCCAACTTCCTGGGTCTCCATCTAGGAGCTGGTTGGAACTCTTCAAATCTAG GAGAAGGAGTGATCATAGGTATGATTGACAGTGGCATCAAATATGATCATCCTTCGTTTTGTGACCAAGGTATGCCTCCACCTCCTGCAAAATGGAAAGG CAAGTGTGAGTTCAATGGTAAGATGACTTATAACAACAAGCTCATAGGAGCTAGAAGCTTTCCCTCTCCAGGGCATGTTTTGGAAGAGGTTTTCCATGGA ACTCATACTGCTGCGGAAGCTGCTGGAACTGCCGTGGAAAGTGCCAACCTGTTTGGACAAGCGAACGGTACAGCAATGGGGATCGCCCCGTTTGCCCACT TGGCGATATACAAGGCCTGTTCAACTTCTTTTGAATGCTTTGAGAGTTCGGTGTTGGCAGCAATGGATGTTGCTATAGAGGATGGTGTTGATGTGCTTTC ACTGTCAATTGGAATTCCATCAGATCATCTTTATGATGATGTAATTGCATTGGGTGCATTCAGAGCCATGCAAAATGGTATCTTTGTGAGCTGTTCAGCT GGCAACGGTGGACCATATAGCTCTTCTTTAGCAAATGAGGCACCTTGGATTTTAACCGTTGGAGCAAGTACCATTGATAGGGATATCAGGACAACAGTGA TATTAGGTAACAATGAGCAATTTCAAACCAATCTCTTTTCCAGCCTAAGGACTTTCTTCCACAGCAACTTCCATTTGTCGATGTTGGCGCCAGTGGCAGT AATTCAGCAACATTTTGTGACGAAGGATCACTGA
AA sequence Show only first row Show all	>Lus10002243 pacid=23172030 polypeptide=Lus10002243 locus=Lus10002243.g ID=Lus10002243.BGIv1.0 annot-version=v1.0 MKALLLITFFFFFFSLQEASASGKSNLDTYIVFLQKPESLVSTQSTDFDLYCWYQTFLPETVLSSSEEQRMVHSYRNAITGFAAKLTPEEAKAMEQKEGF VSARLERTLSLHTTHTPNFLGLHLGAGWNSSNLGEGVIIGMIDSGIKYDHPSFCDQGMPPPPAKWKGKCEFNGKMTYNNKLIGARSFPSPGHVLEEVFHG THTAAEAAGTAVESANLFGQANGTAMGIAPFAHLAIYKACSTSFECFESSVLAAMDVAIEDGVDVLSLSIGIPSDHLYDDVIALGAFRAMQNGIFVSCSA GNGGPYSSSLANEAPWILTVGASTIDRDIRTTVILGNNEQFQTNLFSSLRTFFHSNFHLSMLAPVAVIQQHFVTKDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002243 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	4.0	0.9286
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	4.2	0.9480
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	4.5	0.9209
AT3G21690			MATE efflux family protein (.1...		Lus10027168 [exp]	4.6	0.9282
					Lus10041636 [exp]	9.2	0.9250
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	9.4	0.9031
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10020343 [exp]	13.1	0.8936
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017974 [exp]	13.5	0.9165
AT1G09310			Protein of unknown function, D...		Lus10031428 [exp]	14.3	0.9171
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10034980 [exp]	16.2	0.8804

Compare expression of checked genes

Lus10002243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.