Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 557 / 0 ARA12 Subtilase family protein (.1) AT1G04110 542 / 2e-179 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 516 / 2e-169 Subtilase family protein (.1) AT3G14240 511 / 1e-167 Subtilase family protein (.1) AT4G34980 511 / 2e-167 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 511 / 3e-167 Subtilase family protein (.1) AT2G04160 490 / 3e-159 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 483 / 9e-157 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G51750 477 / 3e-154 ATSBT1.3 subtilase 1.3 (.1) AT5G59810 466 / 3e-150 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006306 [exp] 1509 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 1178 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 1178 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 1127 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 1098 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006310 [exp] 1087 / 0 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 1059 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10029580 [exp] 1050 / 0 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 783 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 832 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 817 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 813 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 792 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 770 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 591 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 550 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.004G173900 [exp] 537 / 1e-177 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.006G141200 [exp] 528 / 7e-174 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 522 / 9e-173 AT5G67360 932 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10002244 pacid=23172020 polypeptide=Lus10002244 locus=Lus10002244.g ID=Lus10002244.BGIv1.0 annot-version=v1.0 ATGATACTAATCAATGGTTTGGGCAGTGGGTCTTTCACTATACCTGCAGCCCACGTCCTCCCTGCATCACACATCAATTACAAGGACGGATTAGCGATCA AAGCTTATTTGAATTCCACGTCATCTCCTACAGCATCAATCTCATTCCAAGGTACCGTGATTGGCAAGTTGACTGCTCCACAAGTAGCATTATTCTCGTC TAGAGGTCCCAGCACACTAACTCCAGGGATCCTGAAACCCGACATCATCGGTCCTGGGGTAAGCATTTTAGCTGCCTGGGGAGAGTCAGTAGACAATACT ACAAATTCATTCAATATAATCTCAGGAACTTCAATGTCTTGCCCACATCTTAGCGGTATTGCAGCTATAATCAAGGCAGTTCATCCAAACTGGTCACCTG CTGCCATAAAGTCGGCCATTTTAACCACAGCTTACACAGTTGACCGAAGTGGCAAGCCAATCTCCACTGAGCAGGATACCCCTGCTACTGTGTTTGATAT GGGTGCTGGCCATGTGAACCCACCAAAAGCTTTGAGTCCTGGCTTGGTATATGATATCCAACCGGATGACTACATCGGCTATCTCTGTGGTTTGGGTTAC AATGACACGCAGGTAAGCATAATCGTCCAGAGAAAAGTCAAGTGCTCGATTGAATCTGCCATATCTGAGGCTCAATTGAACTACCCAACATTTGCTATCT CATTAAGTTCTAGGCCACAAACCTATACCAGAACAGTTACTAATGTTGGTCTGCCTGACTCAACCTACACCAGCAAGGTATCCTCACCAGATGGTGTGGA TGTTAAAGTCACACCGAGTGAAATTAAGTTCAAGGAGCTGGAACAGAGAGAAACATATTCCATAACATTCAGCAGAGTGGGAAATGTGACGGGACCTATA AGCCAAGGTTCCTTGATCTGGTCATCTGCTGATGCTCGCTACAATGTCGTCAGCACAATTGCAGTGGAAACATCAGCTTCTGGGAAAAGCGACTTAAACA CGTACATTGTGTCTTTAGACAAACCAGGAGGCCTATTATCCACGCAATCACTTGATTTTGATTTAAATGGCTGGTACAGAACATTCCTACCCCAAACTAT CTTAAAAAGCTTAACTGAACAAGACCGCATGGTCCATTCCTACCGCAATGTGGTCACAGGATTTGCTGCTAGGCTTACACCAGAAGAAGCAAAAGCAATG CAGCAAGTGGAAGGGTTTGTGTCAGCAAGGGTTGAGAGACCTTTGTCTCTACATACTACTCACACTCCCGAGTTCTTGGGTCTGCTGCAGAATGTAGGAG CTGGTTGGAACACTTCAAATCTTGGCAAAGGAGTGATCATTGGTATCATTGACACTGGCATCAAGTACGACCATCCTTCGTTTTGCGACCAAGGTATGCC TCCACCTCCTGCAAAATGGAAAGGCAAGTGTGAGATCAACGGTAAGATGACTTGTAACAACAAGCTCATCGGTGCCAGAAGCTTTGTCTCTTCGGGGAAT ATATCGGAAGAATTTATCCATGGAACTCATACGGCTGGAGAAGCTGCTGGGATTCCAGTGGAAGGTGCCAATGTGTTTGGGCAAGCTAATGGAACAGCAA TGGGGATCGCCCCATTTGCCCACTTGGCAATGTACAAGGTCTGTATAAATGATGATGAATGCTTTGAGAGTTCCGTATTGGCAGCAATAGATGCAGCTAT AGAGGATGGTGTTGATGTGCTTTCACTGTCACTTGGAAATCCTACAGATAACCCTTTCTATGATGACGCTATTGCATTGGGTGCATTCAGAGCCATTCAA AGTGGCATCTTTGTCAGCTGCTCAGCTGGAAACCAGGGACCAAATAGCTCTTCTGTAGTAAATGAAGCACCTTGGATTTTAACAGTTGGATCAAGTACCA TTGATAGGGATATCCAAACAACAGTGACACTAGGAAACAATGAGAAGTTTCATGGCCAGTCCCTTTTCCAGCCTAAGGACTTCCACCCACATCAAGTGCC ACTTGTCGATGCTGGCGCCAGTGGCAATGCATCAGCAAAATTTTGTACAGGAGGATCACTGAAGAACATTGATGTTAAAGGAAAGATTGTTCTGTGCGAG GTGGAAGTTAATAAGGGAAGAGTCGGCAAAGGAGTAGAAGTAAAAGCAAATGGCGGAGTAGGAATGATCCTAATCAATAGCTTGGCCCAAGGGTATACTA CTATACCTGATGCCCATGTCCTCCCTGCATCACACATCAATTACAAGGATGGATTAGCAATCAAAGCTTATTTGAACTCCACCTCATCTCCTACTGCAAC AATCTCATTCCAAGGTACCTTGATTGGCAAGTCTAGTGCTCCACAAGTAGCTTCGTCCTCGTCGAGAGGTCCTAGCATACAGACTCCTGGGATCCTGAAA CCCGACATTATTGGTCCTGGGGTGGGCATTTTAGCTGCTTGGGGAAAGTCGGTTGACAATACTACCAATTCATTCAATATAATCTCAGGAACTTCAATGT CTTGCCCACATCTTAGTGGCGTTGCAGCTTTGATCAAGGCAGTGCATCCAGACTGGTCTCCTGCTGCCATAAAGTCGGCCATCTTAACCACTGCTTACAC AGTAGATCGAAGTGGCAAGCCAATCTCAAATGAGAAAAATTCCCCTGCTACTGCCTTTGATATGGGTGCAGGCCATGTAAACCCACCAAAAGCTTTGAGT CCTGGTTTGGTATATGATATCCAACCAGATGATTATGTTGGTTACCTCTGTGGTTTGGGGTACAATGACACACAGGTAAACATGATCGTGCAGCGAAAAG TTAACTGTTCGAATGAATCTGCCATTCCGGAGGCTCAATTGAACTACCCTACCTTCGCTATCTCATTAAGTTCTACTCAACAGATCTATACCAGAACAGT CACTAATGTTGGTATGCCTGAATCAACTTACACTAGCAAGGTATTCACACCGGATGGTGTGGATGTTAAAGTCACACCTACTGAGTTTAAGGTCAAAGAG CTGGAAGATAAAACAACATATTCAATAACATTCAGCAGAGTGGGAAATGTGACGGGACCTATAAGCCAAGGTTCCTTGGTCTGGTCATCCGCTGATGCTC GCTACAATGTCGTGAGCACAATTGCTGTTGTATTTGTTTGA
AA sequence Show only first row Show all	>Lus10002244 pacid=23172020 polypeptide=Lus10002244 locus=Lus10002244.g ID=Lus10002244.BGIv1.0 annot-version=v1.0 MILINGLGSGSFTIPAAHVLPASHINYKDGLAIKAYLNSTSSPTASISFQGTVIGKLTAPQVALFSSRGPSTLTPGILKPDIIGPGVSILAAWGESVDNT TNSFNIISGTSMSCPHLSGIAAIIKAVHPNWSPAAIKSAILTTAYTVDRSGKPISTEQDTPATVFDMGAGHVNPPKALSPGLVYDIQPDDYIGYLCGLGY NDTQVSIIVQRKVKCSIESAISEAQLNYPTFAISLSSRPQTYTRTVTNVGLPDSTYTSKVSSPDGVDVKVTPSEIKFKELEQRETYSITFSRVGNVTGPI SQGSLIWSSADARYNVVSTIAVETSASGKSDLNTYIVSLDKPGGLLSTQSLDFDLNGWYRTFLPQTILKSLTEQDRMVHSYRNVVTGFAARLTPEEAKAM QQVEGFVSARVERPLSLHTTHTPEFLGLLQNVGAGWNTSNLGKGVIIGIIDTGIKYDHPSFCDQGMPPPPAKWKGKCEINGKMTCNNKLIGARSFVSSGN ISEEFIHGTHTAGEAAGIPVEGANVFGQANGTAMGIAPFAHLAMYKVCINDDECFESSVLAAIDAAIEDGVDVLSLSLGNPTDNPFYDDAIALGAFRAIQ SGIFVSCSAGNQGPNSSSVVNEAPWILTVGSSTIDRDIQTTVTLGNNEKFHGQSLFQPKDFHPHQVPLVDAGASGNASAKFCTGGSLKNIDVKGKIVLCE VEVNKGRVGKGVEVKANGGVGMILINSLAQGYTTIPDAHVLPASHINYKDGLAIKAYLNSTSSPTATISFQGTLIGKSSAPQVASSSSRGPSIQTPGILK PDIIGPGVGILAAWGKSVDNTTNSFNIISGTSMSCPHLSGVAALIKAVHPDWSPAAIKSAILTTAYTVDRSGKPISNEKNSPATAFDMGAGHVNPPKALS PGLVYDIQPDDYVGYLCGLGYNDTQVNMIVQRKVNCSNESAIPEAQLNYPTFAISLSSTQQIYTRTVTNVGMPESTYTSKVFTPDGVDVKVTPTEFKVKE LEDKTTYSITFSRVGNVTGPISQGSLVWSSADARYNVVSTIAVVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002244 [exp]	0	1
					Lus10010253 [exp]	2.8	0.8827
					Lus10027774 [exp]	4.0	0.8708
AT3G16210			F-box family protein (.1)		Lus10031512 [exp]	7.2	0.7841
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10028332 [exp]	12.8	0.8612
AT1G14930			Polyketide cyclase/dehydrase a...		Lus10042490 [exp]	15.0	0.8121
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	22.4	0.8233
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10040637 [exp]	23.7	0.7476
AT3G09730			unknown protein		Lus10023175 [exp]	36.2	0.7213
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	38.3	0.8110
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	39.5	0.8018

Compare expression of checked genes

Lus10002244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.