Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000738 [exp] 586 / 0 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 551 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10002249 [exp] 518 / 7e-175 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 520 / 4e-173 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008516 [exp] 488 / 5e-169 AT4G27220 59 / 1e-08 NB-ARC domain-containing disease resistance protein (.1) Lus10008526 [exp] 505 / 7e-169 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 424 / 3e-137 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 333 / 3e-105 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008525 [exp] 282 / 2e-92 AT3G44670 52 / 4e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133666 [exp] 46 / 7e-05 AT3G14470 416 / 7e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 44 / 0.0002 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002248 pacid=23172034 polypeptide=Lus10002248 locus=Lus10002248.g ID=Lus10002248.BGIv1.0 annot-version=v1.0 ATGGCTGCGAGGCTGAAAGTTGTACGACTGTCTTCCTATTCGGACTCCAAAAGACTTTCTGGCTGTTGGCGCTTCCCCAAAAGCATTGAGGTATTATCCA TGTTTCTGATAGAAATGGAGGAACTTGATATTGGGGAGTTAAAGAAGCTAAAGACGTTGAAACTAAACGATAGTAAAATACAAAAGGTAAGTGGGGGAAC CTTTGGTATGTTGAAGGGGCTCGTAGAACTTTATCTCGGCAACTTCAAGTGTACAAATTTGAGACAAGTAGTTGCCGATATCAGTCAACTTTCGTCTCTC AAAGTCTTGGACACATATAGAGTTGAAGAGGTCGAGATTAAGGAATTTCCATCAGGTTTGAAGGAGTTATCCACTTCATCTCGGATTCCGAATCTTTCAC AGTTGTTGGATTTGGAGGTACTGCAGGTTTATTATTGCAAGGATGGATTCGACATCCCTCCTGCTAGTCCGAGTGAAGATGAAGGTAGCGTGTGGTGGAA GGTATCCAAGTTGAAGTCTTTGAAACTCTATCGCACAAGAATCAATATCAACGTTGTGGATGCTTCTTCCGGTTGTCGTTATTTACTACCATCGTCGCTA ACCTCTCTCAAAATAAATTCATGTGAAGAACCAACGTGGCTTCCAGGAACAGAGAACTTGGAGAATTTGATTTCGCTGGAAGTCAACGACATCTCCCAAA CTCTTGGAGGTGATTTGGATGGGATTCGGTTAGTAAATGGTTTAGTTCGGATCAAAGGGCTTAAGGATCTCTTGTGTTCTTCTACCTGCAAGTTGCGGAA ATTAGAGATTGAAGCATGCCATGACCTCACTGAGATACTCCCATGCGAACTCCACAACCAAATAGCAGTAGTCCCCTCTCTGGTAGACCTGACCATTATT AATTGTCCACGGCTGGAGGTTGGCCCGATTATACGATCTCTCCCAAAGTTCCCAATGCTAAATCATTTGACTCTCTCGATGGTAAATATCACTAAGGAGG AGGATCTGGATGTGATCGGATCCTTAGAAGAGTTGGTTGATTTATGGTTAGAGTTAGAGGATACATGTTCCAGCATAGAGAGGATAGCTTCCTTGTCGAA GCTGCAAAAGTTAACTACACTCATAGTGAAGGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGAAGAGTTGAAGTCTTTACGGAAGTTGATTTTAGAGGGT TGCACGTCGTTGGGGACACTGTGGGCGACTGGGAATCAGCAACTCGATAAGCTGAAGGTGCTAGACATCCGAGGATGCAATAGCTTGAGTGTAGACCATC TCTCTGCACTGAAGACCAGTCTACAGCCCAATGTAGAGATAAGATGGCCCCGTGAAGAAATGTAA
AA sequence Show only first row Show all	>Lus10002248 pacid=23172034 polypeptide=Lus10002248 locus=Lus10002248.g ID=Lus10002248.BGIv1.0 annot-version=v1.0 MAARLKVVRLSSYSDSKRLSGCWRFPKSIEVLSMFLIEMEELDIGELKKLKTLKLNDSKIQKVSGGTFGMLKGLVELYLGNFKCTNLRQVVADISQLSSL KVLDTYRVEEVEIKEFPSGLKELSTSSRIPNLSQLLDLEVLQVYYCKDGFDIPPASPSEDEGSVWWKVSKLKSLKLYRTRININVVDASSGCRYLLPSSL TSLKINSCEEPTWLPGTENLENLISLEVNDISQTLGGDLDGIRLVNGLVRIKGLKDLLCSSTCKLRKLEIEACHDLTEILPCELHNQIAVVPSLVDLTII NCPRLEVGPIIRSLPKFPMLNHLTLSMVNITKEEDLDVIGSLEELVDLWLELEDTCSSIERIASLSKLQKLTTLIVKVPSLREIEGLEELKSLRKLILEG CTSLGTLWATGNQQLDKLKVLDIRGCNSLSVDHLSALKTSLQPNVEIRWPREEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	0	1
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10003156 [exp]	2.0	0.8522
					Lus10024718 [exp]	4.7	0.8184
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10024505 [exp]	6.9	0.8292
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	11.0	0.8197
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	11.3	0.8432
AT5G25820			Exostosin family protein (.1)		Lus10002799 [exp]	12.0	0.8009
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	12.2	0.8305
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	13.6	0.8010
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	16.7	0.7965
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006306 [exp]	18.2	0.8419

Compare expression of checked genes

Lus10002248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.