Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008516 [exp] 246 / 3e-77 AT4G27220 59 / 1e-08 NB-ARC domain-containing disease resistance protein (.1) Lus10004719 [exp] 234 / 1e-69 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008525 [exp] 145 / 1e-41 AT3G44670 52 / 4e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008526 [exp] 139 / 1e-36 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002248 [exp] 135 / 2e-36 AT5G40060 42 / 0.001 Disease resistance protein (NBS-LRR class) family (.1) Lus10000738 [exp] 128 / 4e-33 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 120 / 4e-30 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007790 [exp] 107 / 6e-26 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026723 [exp] 84 / 1e-19 AT4G36150 45 / 5e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002250 pacid=23172015 polypeptide=Lus10002250 locus=Lus10002250.g ID=Lus10002250.BGIv1.0 annot-version=v1.0 ATGCTAAAGAAGTTGGACCTTGCGGTGGCAAATATAACTAAAGAGGAGGATCTGGATGTGATTGGATCCTTACAAGAGTTGGTTGATTTACGGTTAGAGT TAGATGATACATCTTCCGGTATAGAGAGGATAGCTTCCTTGTCGAAGCTGAAAAAGTTAACTACACTCAGAGTGAAGGTGCCGAGTTTGCTGGAGTTTGA AGGGCTTGCAGAGTTGAAGTCTTTAAGGAAGTTGATTTTAGAGGGTTGCACGTCGTTGAGGAGACTACGTCTGGAGAAGCTGAAGGAGCCAGACATTGGA GGATGCCCTGACCTCACTGAGTTAGTCCAAACAGTAGTAGTATGCCCCTCTTTGGTAGAACTGACCATTAGGGATTGTCCACGGCTGGAGGTTGGTCCGA TGATACAATCTCTTCTAAAGTTCCCATTGGTAAAGGATTTGAATCTGTCGATGGTAAATATCACTAAGGAGGAGGATCTGGATGTGATTGGATCCCTAGA AGAGTTGGTTAGTTTGGAGTTAAAGTTAGATGATACATCTTCTTCCAGCATAGAGAGGATATCTTTCTTGTCAAAGCTGCAAAAGTTATTTACACTCAGA GTGAAGGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGCAGAGTTGAAGTCTTTAAGGAAGTTGATTTTAGAGGGTTGCACGTCGTTGAGGAGACTACGTC TGGAGAAGCTGAAGGAGCCAGACATTGGAGGATGCCCTGACCTCACTGAGTTAGTCCAAACAGTAGTAGTATGCCCCTCTTTGGTAGAACTGACCATTAG GGATTGTCCACGGCTGGAGGAGGATCTGGATGTGATTGGATCCTTACAAGAGTTGGTTGATTTACGGTAA
AA sequence Show only first row Show all	>Lus10002250 pacid=23172015 polypeptide=Lus10002250 locus=Lus10002250.g ID=Lus10002250.BGIv1.0 annot-version=v1.0 MLKKLDLAVANITKEEDLDVIGSLQELVDLRLELDDTSSGIERIASLSKLKKLTTLRVKVPSLLEFEGLAELKSLRKLILEGCTSLRRLRLEKLKEPDIG GCPDLTELVQTVVVCPSLVELTIRDCPRLEVGPMIQSLLKFPLVKDLNLSMVNITKEEDLDVIGSLEELVSLELKLDDTSSSSIERISFLSKLQKLFTLR VKVPSLREIEGLAELKSLRKLILEGCTSLRRLRLEKLKEPDIGGCPDLTELVQTVVVCPSLVELTIRDCPRLEEDLDVIGSLQELVDLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19510			Disease resistance protein (TI...		Lus10002250 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	2.4	0.9401
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	3.2	0.9308
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10010149 [exp]	6.9	0.9285
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	8.8	0.9299
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	10.9	0.9266
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	14.1	0.9102
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	15.0	0.9212
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10004006 [exp]	16.7	0.9049
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	18.3	0.9242
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	19.0	0.9270

Compare expression of checked genes

Lus10002250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.