Plant FIBer expression Database

Lus10002251 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42330 129 / 3e-35 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2)
AT1G17070 125 / 7e-34 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000930
[exp]
283 / 1e-91 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G076000
[exp]
206 / 1e-62 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
Potri.019G043200
[exp]
193 / 1e-58 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
PFAM info
Representative CDS sequence
>Lus10002251 pacid=23153435 polypeptide=Lus10002251 locus=Lus10002251.g ID=Lus10002251.BGIv1.0 annot-version=v1.0
ATGGGTTGGAAGGGCCTTCTCCCACCGGAGCTTCAGGCACATGAAAATATCCGGTATCAGTTTACAATAGGCTTAAAGATGATTGATCAGGCTATCGAAG
GTCAAACGGTTGCCCAACCCGGTTTAAGGGAGAACCTTAGCTACATTCGGGCACAAGAGTACAGAGCAGCTCAGCCTCCGCAACAAGCTCCGGCCCGGAT
GGATAATGTTGCAGTCGAGATGACTTTGAAAGACGTGGTGGAGACCCATGCTCAGCATCACGGTCTCCTGTTTAAGCCGAAGCCGAACAGGACTCACAAT
GGCCATCAGATATATGGCTATGGTAATGTAAGCGTGTATGTGGACTCTCTGAATCAGAGACTTTATGCTCAGAATGAGCAGAGTTGGGTGCTTGCCAACC
TTGACATGTTGTTCGAGATGCATAACAATTCTTTTCGGAGGAAACGCTGA
AA sequence
>Lus10002251 pacid=23153435 polypeptide=Lus10002251 locus=Lus10002251.g ID=Lus10002251.BGIv1.0 annot-version=v1.0
MGWKGLLPPELQAHENIRYQFTIGLKMIDQAIEGQTVAQPGLRENLSYIRAQEYRAAQPPQQAPARMDNVAVEMTLKDVVETHAQHHGLLFKPKPNRTHN
GHQIYGYGNVSVYVDSLNQRLYAQNEQSWVLANLDMLFEMHNNSFRRKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G17070 GC-rich sequence DNA-binding f... Lus10002251
[exp]
0 1
AT5G20900 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 1... Lus10011929
[exp]
7.4 0.6848
AT4G21580 oxidoreductase, zinc-binding d... Lus10018450
[exp]
7.7 0.7460
AT4G21110 G10 family protein (.1) Lus10023881
[exp]
7.9 0.6764
AT2G28380 DRB2 dsRNA-binding protein 2 (.1) Lus10000721
[exp]
11.8 0.6853
AT1G16740 Ribosomal protein L20 (.1) Lus10006327
[exp]
16.3 0.6951
AT3G20890 RNA-binding (RRM/RBD/RNP motif... Lus10030140
[exp]
22.0 0.6784
AT5G53280 PDV1 plastid division1 (.1) Lus10027574
[exp]
26.7 0.6304
AT2G19270 unknown protein Lus10020014
[exp]
27.1 0.6568
AT5G60460 Preprotein translocase Sec, Se... Lus10036119
[exp]
37.8 0.6579
AT5G40190 RNA ligase/cyclic nucleotide p... Lus10014523
[exp]
40.6 0.6597

Lus10002251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.