Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27320 550 / 0 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 545 / 0 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 498 / 2e-178 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 220 / 2e-69 ATCXE18 carboxyesterase 18 (.1) AT5G62180 158 / 2e-45 ATCXE20 carboxyesterase 20 (.1) AT1G68620 153 / 2e-43 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 150 / 2e-42 ATCXE17 carboxyesterase 17 (.1) AT5G06570 149 / 7e-42 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45610 138 / 6e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 134 / 1e-36 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000928 [exp] 713 / 0 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 517 / 0 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10018963 [exp] 421 / 2e-149 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 237 / 7e-76 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 229 / 2e-72 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10008189 [exp] 189 / 4e-60 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10017587 [exp] 171 / 5e-50 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10036168 [exp] 169 / 1e-49 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033548 [exp] 166 / 4e-48 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028700 [exp] 578 / 0 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 569 / 0 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 534 / 0 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 531 / 0 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 272 / 1e-89 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 251 / 3e-81 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G092500 [exp] 238 / 4e-76 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.017G113700 [exp] 171 / 4e-50 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.004G101400 [exp] 167 / 1e-48 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.006G198800 [exp] 166 / 2e-48 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10002254 pacid=23153442 polypeptide=Lus10002254 locus=Lus10002254.g ID=Lus10002254.BGIv1.0 annot-version=v1.0 ATGGTGAAGAGTAATGAAGTCACTACCGTCAATGAAAGCAAGATGGTAGTGCCTTTGAATACATGGGTACTGATATCAAACTTCAAGCTAGCTTATAATC TGCTCCGTAGGCCGGATGGAACGTTCAACCGGCATTTGGCGGAGTTCCTTGACAGGAAAGTTGCTGCGAATGCGAACCCCGTTGATGGGGTCTTCTCGTT CGATGTTATTGTCGATCGTGCCACAAATCTGCTTTGCAGGATCTACAGACCTTCCAATGGGGAAGAACAGTTGAATGTGGCCGAACTCGAAAAGCCGGTG AAGTCTGCTGATAATGATGATGTTGTGCCAGTCATTGTGTTCTTCCATGGAGGAAGCTTTGCACATTCGTCAGCAAACAGTGCCATCTACGATACCTTAT GTCGAAGGCTGGTGGGTCTTTGCAACGCGGTGGTGGTCTCGGTGAATTATAGGCGAGCACCAGAGCACCGGTATCCATCTGCTTACGATGATGGCTGGAC GGCTCTCAACTGGGTTAAATCCAGAACATGGCTGGAGAGTAGTAAAAGTTCCAAAGTTCACATCTTTTTAGCTGGAGATAGTTCGGGTGGGAACATAGCT CACCACGTGGCTTTACGAGCTGCTGAATCGGAGATCGAGATACAGGGCAACATGTTACTGAACCCGATGTTTGGAGGGGAAGTGAGGACCGAATCGGAGA TGAGGCTTGACGGGAAGTACTTTGTTTCCGTCCAGGATAGGGACTGGTATTGGAGAGCGTTTCTCCCTGATGGAGCTGATAGGGACCATCCAGCTTGCAA TCCATTCGGTCCAAAAGCTACGAGCCTCGAAGGAACGAAGCTATTCCCCAAGAGCTTCGTTGTTATAGCTGGCTTGGATTTGGTCCAGGACTGGCAGTTG GCTTACGTGGAAGGACTTAAGAAGGCTGGAAAGGATGTGAAGTTTCTGTATCTCGAGAAGGCGACGATAGGGTTCTACTTGTTGCCGAATAATGCTCATT TCCATACTGTGATGGACGAGATTCAGCAATTCGTGAGATCTAACTGTTGA
AA sequence Show only first row Show all	>Lus10002254 pacid=23153442 polypeptide=Lus10002254 locus=Lus10002254.g ID=Lus10002254.BGIv1.0 annot-version=v1.0 MVKSNEVTTVNESKMVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVAANANPVDGVFSFDVIVDRATNLLCRIYRPSNGEEQLNVAELEKPV KSADNDDVVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCNAVVVSVNYRRAPEHRYPSAYDDGWTALNWVKSRTWLESSKSSKVHIFLAGDSSGGNIA HHVALRAAESEIEIQGNMLLNPMFGGEVRTESEMRLDGKYFVSVQDRDWYWRAFLPDGADRDHPACNPFGPKATSLEGTKLFPKSFVVIAGLDLVQDWQL AYVEGLKKAGKDVKFLYLEKATIGFYLLPNNAHFHTVMDEIQQFVRSNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10002254 [exp]	0	1
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	2.0	0.9383
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	3.7	0.9431
AT2G27940			RING/U-box superfamily protein...		Lus10016163 [exp]	9.8	0.8866
AT1G20460			unknown protein		Lus10012282 [exp]	10.1	0.9340
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	10.2	0.9375
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	14.6	0.8845
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	15.4	0.9350
AT2G24550			unknown protein		Lus10026939 [exp]	15.5	0.9343
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10017354 [exp]	15.5	0.9185
AT3G14830			unknown protein		Lus10041938 [exp]	16.2	0.9238

Compare expression of checked genes

Lus10002254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.