Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05130 96 / 1e-20 unknown protein AT5G27330 72 / 8e-13 Prefoldin chaperone subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000927 [exp] 781 / 0 AT3G05130 150 / 1e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028600 [exp] 153 / 1e-39 AT5G27330 289 / 6e-89 Prefoldin chaperone subunit family protein (.1) Potri.005G040500 [exp] 125 / 4e-30 AT5G27330 247 / 2e-73 Prefoldin chaperone subunit family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002255 pacid=23153443 polypeptide=Lus10002255 locus=Lus10002255.g ID=Lus10002255.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAGAAGACCCACTCCAAGACTGAGAACGACGACACTCTGAATCTGGACCAGAACCAGAACCAGAACCAGAACCACTCGCCGCCGCCGCCAC AGTTGGAGCAGTCAGCAGTCCTAGCAATGGCGGAACAACCACACCTACCGCCTCCGCCTCCTCCGGCGGCGGCAAAAACTTCCTCCTTGGAAGTTGATTC CGAGTTCCAGAATCTGCAGAAGCTGAACAAGATGCTGGTGCAGGACGTTGCGGATAAGAGGCGGAAGATGGAGGCTCTCGAGACGGAGAAGAAGCAATTG GTGGCGGAGGTGAAGGAGCTGGGAAGTGCAACCGAGGGGAGCATCCGTTCGGAGATCGAGCGTGAGGTGGCCTTCACTGTTCTTGGAGAAATGGAGGTGA TCGAGCGATTGACTGCTGAGGTGGAGGACGAGAAGGTTAAGCTGAGCAAGATTTGTACGGAGAAGGATGCGATTAAGAGCCAGCTCGATGAGCAGATTCT GGAAGGGGAAAGGTTGAAGGTGATAGTGAAGGAGATGGAGAAGAAAGGGAAGGAGAACGAGGACGAGATTCTTGGACTGACGAAGGAGGTTGAAGAGTTG GTGAAGCAGAAGAAGGATTCGGAGAAAGAAATTGATCGGATTGAAAGGATTAGGGTGTCCAACGAGAGGAGTCTGGCTGAGAAGGCTGAGGAGATTGGAG CGTTGAAGGTTGAGATTGAGCGGATTGAGAAAGAGAGGAGTGATCAGGTTTTCAAGATAGAGTTCTTGGAGAAAGATTTTGAAGGACTGAACACTGATTT GCTGAGCTTGAGGAGCGAAAATGGAAGTTTGAGTGAGAAGGTAGTGTATCTGGAGAAGGTGTACGGTGAAGCAATTGAGAAGGAGAAAGCTTTTGGGCTG AAGTTTGATTTATTGACGGAAGAAATGATTCAGAATAGCAAGAGGATTGAAGAGTTAACAGAGGAGAAGAGCTCTTCGGAGAAGACTATCGAGTCTGTGA ATGCTGAACTGGAGCTGAAGAACGAGCTGATTCAGAAGCTGTCGAGCGAGAAATCCGAGATCGAGAGGATCTCCAAGAGGAAGGAGAGTGAGATCATGGA GTTGCAGAGCAATGTCAGCGAGTTGAACGAATCAGTTCTTCGACTGAAAGACTCTCTCAAGGTTCAAGAAGAAAAGAACAGTGAGTTAGGCATTGAATCC AGTAAGTTCAGAGATGAGCTTCAGCAAGTGAGAATTGAGAAAGAAGAGCTAAAGAAGCTTCTTGATCAGGAAACTAATGAAGGGTCGAAGCTGAAAGCTT TAGTTCAAGAGATGGAGAAAAGGACTGAAGACGGACTACAGAAGCTGGAGAAGGCTAAGATCGAACAGAAGAATCTAATGGAGGTTAAGAAATCACTGGA GTTCGAACTCAACCAGTTGAAGAAGGAGAGCTCTGCAACTCAGAAGAGGCTCTCCGATCAAAACGGCGATCTGACGAGCAAGCTACGCTTGGTGGCATCA CTGCTCCCTCAGGATGATGATAGCAGCAGCAATGGCAATGGCAAGGAACTCAAAGAGCTGGTGGAAAACGTTAGGGGATCGTTCAGAGAGAAGGAAGCAT TGCTGGTGAAGAAGAATCTGCAGGTGACATCTCTCGAGGAATCCGTTGCAGAAGCGGAGAGGAAGAAGGGCATCTGGGCAATGGTTTCTTCAGTCACGAC CTTGCTCGCCGCTGCTTCCCTTGCCTTCGCTTTCAAGGTGCGTTAA
AA sequence Show only first row Show all	>Lus10002255 pacid=23153443 polypeptide=Lus10002255 locus=Lus10002255.g ID=Lus10002255.BGIv1.0 annot-version=v1.0 MAKKKTHSKTENDDTLNLDQNQNQNQNHSPPPPQLEQSAVLAMAEQPHLPPPPPPAAAKTSSLEVDSEFQNLQKLNKMLVQDVADKRRKMEALETEKKQL VAEVKELGSATEGSIRSEIEREVAFTVLGEMEVIERLTAEVEDEKVKLSKICTEKDAIKSQLDEQILEGERLKVIVKEMEKKGKENEDEILGLTKEVEEL VKQKKDSEKEIDRIERIRVSNERSLAEKAEEIGALKVEIERIEKERSDQVFKIEFLEKDFEGLNTDLLSLRSENGSLSEKVVYLEKVYGEAIEKEKAFGL KFDLLTEEMIQNSKRIEELTEEKSSSEKTIESVNAELELKNELIQKLSSEKSEIERISKRKESEIMELQSNVSELNESVLRLKDSLKVQEEKNSELGIES SKFRDELQQVRIEKEELKKLLDQETNEGSKLKALVQEMEKRTEDGLQKLEKAKIEQKNLMEVKKSLEFELNQLKKESSATQKRLSDQNGDLTSKLRLVAS LLPQDDDSSSNGNGKELKELVENVRGSFREKEALLVKKNLQVTSLEESVAEAERKKGIWAMVSSVTTLLAAASLAFAFKVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05130			unknown protein		Lus10002255 [exp]	0	1
AT3G01790			Ribosomal protein L13 family p...		Lus10014597 [exp]	3.2	0.8644
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	5.7	0.8749
AT2G37020			Translin family protein (.1.2)		Lus10029829 [exp]	9.2	0.8468
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10014210 [exp]	14.4	0.8359
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	15.5	0.8503
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	17.9	0.8356
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	18.2	0.8478
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	20.1	0.8167
AT4G28310			unknown protein		Lus10018597 [exp]	28.0	0.8438
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035632 [exp]	28.8	0.8435

Compare expression of checked genes

Lus10002255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.