Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21510 129 / 4e-39 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT3G29350 122 / 1e-36 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT5G39340 121 / 6e-36 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT1G03430 121 / 6e-36 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT3G16360 103 / 2e-29 AHP4 HPT phosphotransmitter 4 (.1.2) AT1G80100 59 / 7e-12 AHP6 histidine phosphotransfer protein 6 (.1.2) AT4G04402 41 / 6e-05 two-component phosphorelay mediator, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000926 [exp] 198 / 2e-66 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10012777 [exp] 143 / 1e-44 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 143 / 2e-44 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10035596 [exp] 99 / 2e-27 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10042680 [exp] 99 / 3e-27 AT1G03430 142 / 2e-43 histidine-containing phosphotransfer factor 5 (.1) Lus10003256 [exp] 98 / 5e-27 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10038280 [exp] 93 / 8e-25 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10025821 [exp] 93 / 9e-25 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10027965 [exp] 85 / 4e-22 AT1G03430 119 / 2e-35 histidine-containing phosphotransfer factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G040400 [exp] 172 / 3e-56 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.013G028300 [exp] 172 / 4e-56 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.016G113500 [exp] 145 / 2e-45 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.006G098200 [exp] 139 / 5e-43 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.010G027100 [exp] 136 / 3e-42 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.008G197600 [exp] 130 / 1e-39 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.014G136200 [exp] 107 / 7e-31 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1) Potri.001G189900 [exp] 105 / 5e-30 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.006G236300 [exp] 98 / 4e-27 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2) Potri.018G046800 [exp] 97 / 2e-26 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10002256 pacid=23153436 polypeptide=Lus10002256 locus=Lus10002256.g ID=Lus10002256.BGIv1.0 annot-version=v1.0 ATGGATGGTGTGGTTCAGTTGCAGAGGCAATTGGTTGACTACACAGCTTCACTATTCCAAGAGGGAATCTTGGATGACCAATTCACTCAACTCCAAAGCC TCCAAGATGAGAGCAACCCTGAGTTTGTTGTGGAAGTTGTCTCCCTCTTCTTTGAAGACTCTGAGAGGCTCATCAATGAGCTTGCTAATTCCTTAGAGCA ACAAAGCATTGATTTCAAGAAGATTGATGCCCATGTCCACCAATTGAAGGGCAGTAGTTCTAGCATTGGAGCTCAAAGGGTTCAAAAGGCTTGCATTGAT CTTCGAAATCACTGTGAAGAACAGAATTCTGAAGGATGCCGGAAATGTCTTCAACGAGTGAAGATTGAGTATGTCGGAAATGTCTTCAACAAGTGA
AA sequence Show only first row Show all	>Lus10002256 pacid=23153436 polypeptide=Lus10002256 locus=Lus10002256.g ID=Lus10002256.BGIv1.0 annot-version=v1.0 MDGVVQLQRQLVDYTASLFQEGILDDQFTQLQSLQDESNPEFVVEVVSLFFEDSERLINELANSLEQQSIDFKKIDAHVHQLKGSSSSIGAQRVQKACID LRNHCEEQNSEGCRKCLQRVKIEYVGNVFNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10002256 [exp]	0	1
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	7.6	0.9430
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	9.3	0.9446
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	12.1	0.9428
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	12.2	0.9339
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	13.9	0.9414
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	13.9	0.9383
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	17.5	0.9408
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	18.2	0.9337
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10026700 [exp]	18.3	0.9330
AT1G30540			Actin-like ATPase superfamily ...		Lus10023262 [exp]	19.7	0.9028

Compare expression of checked genes

Lus10002256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.