Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54710 853 / 0 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 660 / 0 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT5G54730 305 / 1e-90 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT5G05150 53 / 6e-07 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT2G40810 50 / 6e-06 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 50 / 6e-06 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT3G62770 48 / 2e-05 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000925 [exp] 1670 / 0 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10018960 [exp] 1271 / 0 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033817 [exp] 1012 / 0 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10035835 [exp] 447 / 7e-144 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10036618 [exp] 441 / 5e-141 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10033818 [exp] 230 / 3e-68 AT1G54710 83 / 2e-17 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10029900 [exp] 50 / 7e-06 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 49 / 1e-05 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 49 / 2e-05 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028200 [exp] 1024 / 0 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.005G040300 [exp] 1018 / 0 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.011G132700 [exp] 483 / 5e-156 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 471 / 9e-152 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.019G062800 [exp] 52 / 1e-06 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.014G132300 [exp] 49 / 1e-05 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 46 / 9e-05 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12490 [flax] [poplar] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Lus10002257 pacid=23153431 polypeptide=Lus10002257 locus=Lus10002257.g ID=Lus10002257.BGIv1.0 annot-version=v1.0 ATGAAGAATAACAACAAGGGAAACAACAGCAGCAATGGCTTCTTTCCCAGCTCTCTGAAATTCATTTCCTCCTGTATCAAGACCGCTTCTTCCGGCGTCC GGTCAGCTGCCGCTTCGATCTCTGGTGATAATCAAGGCGGGATAAAGGAGCAGGTACTCTGGGCCTCATTTGACAAACTTCAGCTTAGTCCGTCATCCTA CAGAAATGTTCTCCTACTTGGATACTCAAATGGCTTCCAAGTGATTGATGTCGAAGATGCTTCTGGTGTTACTGAGCTTGTTTCAAGACGGGATGATCCA GTCACCTGTTTACGAATGCAGCCACTTCCTGCTAAGGCTGAGGGCTGTGAGGGATTTAGAGCTGCACATCCTTTGGTCTTAGTTGCCTGTCAGGAATCAG ATACACCCCCAGTTGTTATCAGTGGGAAAGATGGTTTAGCTCGAGATAGCTCCAATGAGCATCAAGCAGGGAACTTTGCCACTGTAGTTCGTTTTTACTC TCTGAAGTCCCACAACTATGTCCATGTTCTAAAATTCATGTCACCTGTTTTCATGGTTAGATGCAGCCCTCGTATAGTTGCAGTTGGTCTCGCCACACAG ATATACTGCTTTGATGCTCTCACTCTAGAGAACAAGTTCAGTGTGCTCACATATCCTGTCCCACAATTGGCTGGCCAAGGAGGGATTATGGCTAACCCGG GGTATGGCCCAATGGCTGTGGGGCCTAGATGGATAGCTTATGCTTCTGACAATCCGTTGGTATCTAATACTGGCCGCCTAAGTCCACAGTGTCTTACGCC TTCCATGGGTGTCAGTCCATCAACTTCACCTGGCAATGCCAATCTAGTAGCTCGCTATGCCATGGAATCTAGCAAGCATTTAGCTAGTGGGTTGATGAGT TTAGGTGATATGGGCTACAAGACATTGTCTAGATACTGTCAAGATTTCGTTGCTGATGGTTCTAGCTCCCCTGTCTCTCCAAATTCTAGCCGGAAAGGAT GGGTTGCACCTCATTCAGCTGAAGCTGATATTGCTGGAACGGTTGTTGTGAGAGATTTTGTTACAAGAGCTGTGATTTCGCAATTTAGAGCTCATACAAG TCCCATTTCTGCTCTATGTTTTGATCCGAGTGGTACACTATTGGTTACCGCATCAATTCATGGACACAACATAAACATTTTCCGGATCATGCCTTCTGCT GTTGCTGGTGGCTCAGGTGCAAAGAGTTTCAAATGGAGCTCTTCTCATGTGCACCTTTACAAGCTTCATAGGGGCATTACTTCTGCGGTGATACAGGATA TTTGCTTCAGCAGTTATAGTCAGTGGGTTGCCATAACTTCATCCAGGGGAACCTGCCATATTTTTGCACTTTCACCGTTTGGTGGTGAGAATGTTCTCCA ATTACAGAACTCTGACGTGGATGGACCAGTCCTTTCACCGGTTTTATCGCTACCATGGTGGTCAACTCCATGGTTCCAAGCGAACGCACAATCCTTCTCT GAATCCCCACCACCACCACCTGTTACTCTTTCTGTGGTGGCTCGAAGAAAGAGAAAGGCCTTGATACCGTCAGGTGCTGTTGCTGCCGTCTATCACAACT GTGTACCACAAGATTCACGACCTTCGCATTTGAAGAAATCTAATGCCCTGGACCACCTTTTAGCGTATACTCCATCCGGCCATGTAGTCCAATACAAATT GGTGTCTTCAGTTGGGACAGAACCTAGTGAAGGTCCTCAAAGAACTGGACTAGGTTCTTCACTGCAGACACCAGACGAGGAACTGCGAGTCAAAACCGAG TCTGTGCAGTGGTGGGATGTTTGCAGAAGAATAGATTGGCCAGAAAGAGAGGAGTATGTGTCTGGACTCGCTCATAGCAGGCATGGAAACACAGAAGTGG CCATGGATACTTCTGATTCTGCAGATAATGGGAGCAGGAATGCTGCAGAGGCTTCTGATTACCGAAATAATGCTACAAGGAATATGGACTTGGTAAAATC ACATGAGCAGTCTCGCTTATATCTTGCTAATGCCGAAGTGCAGATAAGCCCCTGGAGAACACCTCTCTGGCAGAAATCTAAGGTCTACTTCCATGCAATT GATGGCATTGGAGCTGATGACCAGAATGCCGCTGATGATTCCAGTGGAGAAACTGCAATTGAGGAGGTTCAATGCCATGAAAGTGAAATCAGGAGGAAGG ATCTACTGCCTGTTTTCGACAATTTCCACAGAATTGCTGATTGGAGCGACCGGGGACTTCGGAGGGAAAGATCCACCATTTCTACTGGATCTGGATCTAC TGTTCCTACGGTTTTACAGCATAAGATGATTTCATCAAGCTCTAATGCAAACTCAGAAACTGGCTCGTTAGCTAACTTGTACATATCAGCTCAACATCCT CGAGAAAAATTTGGAGGAGGACGAGTGATTTCTGGTTTGGCATCCCCAACTAATAAGCCTTCTCCAATGAGCCTTTCTCCTGCTGACGACAGCAACTCTG TACATAGTGAAATAGCGTCTTTAACAAACAGCTCACCTTCTCATATGGGAGTCGAAGGCCAGTCTTCGTCATCAGCCAGTGCTCTGACCAGCACATCGTC AAGCTCCAACCGTTCTGATCTAAGCGCAAACCTGATCGACGAAGGGATGGCGAGTGAGTCCCCCGATTTCGAGCAGGTTTTCCAGGAGGGATACTGTAAA TCTGAACGTCCCCCCGAATCAGCTGCCGATCTCGAGAACAGCCCTGATGAAGAGGATGATGACATGCATGGAGGGGTTTTTCTTTTCTCAGAGGAAGGTT AA
AA sequence Show only first row Show all	>Lus10002257 pacid=23153431 polypeptide=Lus10002257 locus=Lus10002257.g ID=Lus10002257.BGIv1.0 annot-version=v1.0 MKNNNKGNNSSNGFFPSSLKFISSCIKTASSGVRSAAASISGDNQGGIKEQVLWASFDKLQLSPSSYRNVLLLGYSNGFQVIDVEDASGVTELVSRRDDP VTCLRMQPLPAKAEGCEGFRAAHPLVLVACQESDTPPVVISGKDGLARDSSNEHQAGNFATVVRFYSLKSHNYVHVLKFMSPVFMVRCSPRIVAVGLATQ IYCFDALTLENKFSVLTYPVPQLAGQGGIMANPGYGPMAVGPRWIAYASDNPLVSNTGRLSPQCLTPSMGVSPSTSPGNANLVARYAMESSKHLASGLMS LGDMGYKTLSRYCQDFVADGSSSPVSPNSSRKGWVAPHSAEADIAGTVVVRDFVTRAVISQFRAHTSPISALCFDPSGTLLVTASIHGHNINIFRIMPSA VAGGSGAKSFKWSSSHVHLYKLHRGITSAVIQDICFSSYSQWVAITSSRGTCHIFALSPFGGENVLQLQNSDVDGPVLSPVLSLPWWSTPWFQANAQSFS ESPPPPPVTLSVVARRKRKALIPSGAVAAVYHNCVPQDSRPSHLKKSNALDHLLAYTPSGHVVQYKLVSSVGTEPSEGPQRTGLGSSLQTPDEELRVKTE SVQWWDVCRRIDWPEREEYVSGLAHSRHGNTEVAMDTSDSADNGSRNAAEASDYRNNATRNMDLVKSHEQSRLYLANAEVQISPWRTPLWQKSKVYFHAI DGIGADDQNAADDSSGETAIEEVQCHESEIRRKDLLPVFDNFHRIADWSDRGLRRERSTISTGSGSTVPTVLQHKMISSSSNANSETGSLANLYISAQHP REKFGGGRVISGLASPTNKPSPMSLSPADDSNSVHSEIASLTNSSPSHMGVEGQSSSSASALTSTSSSSNRSDLSANLIDEGMASESPDFEQVFQEGYCK SERPPESAADLENSPDEEDDDMHGGVFLFSEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	0	1
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	2.0	0.9289
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	3.5	0.9119
AT1G22930			T-complex protein 11 (.1.2)		Lus10001363 [exp]	3.5	0.9124
AT4G28260			unknown protein		Lus10018587 [exp]	4.9	0.9168
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	6.3	0.9119
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	7.2	0.9122
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	8.4	0.8933
AT3G51130			unknown protein		Lus10025972 [exp]	8.5	0.9045
AT1G71090			Auxin efflux carrier family pr...		Lus10036001 [exp]	9.5	0.9030
AT4G27020			unknown protein		Lus10043107 [exp]	10.6	0.8617

Compare expression of checked genes

Lus10002257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.