Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 308 / 3e-97 Major facilitator superfamily protein (.1.2.3) AT4G04750 298 / 4e-93 Major facilitator superfamily protein (.1) AT2G48020 280 / 2e-86 Major facilitator superfamily protein (.1.2) AT3G05160 265 / 4e-81 Major facilitator superfamily protein (.1.2) AT3G05165 265 / 9e-81 Major facilitator superfamily protein (.1.2.3.4.5) AT1G08930 262 / 2e-79 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27360 258 / 5e-78 SFP2 Major facilitator superfamily protein (.1) AT3G05150 256 / 2e-77 Major facilitator superfamily protein (.1) AT3G20460 253 / 5e-76 Major facilitator superfamily protein (.1) AT5G27350 252 / 8e-76 SFP1 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000924 [exp] 643 / 0 AT4G04750 371 / 1e-124 Major facilitator superfamily protein (.1) Lus10033795 [exp] 414 / 2e-138 AT4G04750 360 / 3e-120 Major facilitator superfamily protein (.1) Lus10018957 [exp] 391 / 1e-128 AT4G04750 326 / 2e-106 Major facilitator superfamily protein (.1) Lus10033815 [exp] 360 / 8e-118 AT1G54730 305 / 8e-100 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 309 / 2e-97 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 267 / 2e-81 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10035356 [exp] 266 / 7e-81 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029960 [exp] 264 / 1e-79 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10027975 [exp] 269 / 3e-79 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027500 [exp] 318 / 8e-101 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G040000 [exp] 291 / 1e-90 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 286 / 1e-88 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 285 / 3e-88 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 273 / 8e-84 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.002G212900 [exp] 271 / 4e-83 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 266 / 3e-81 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 258 / 4e-78 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.010G026500 [exp] 255 / 9e-77 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 234 / 4e-69 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10002258 pacid=23153444 polypeptide=Lus10002258 locus=Lus10002258.g ID=Lus10002258.BGIv1.0 annot-version=v1.0 ATGGCGGGTCAGAAGTCAAAGCACAGAGTACTTCTTCGCCTTTCACTGCAACCCTTCTGCTCAGCCTCTTCTCCGTTGCTTGTGGGTGCCCTTCTGCTCA GCCTCTTCTCCGTTGCTTGTGGCTGCTGCTCAACTGGCTGCACTGTTTTGAAGAGTTTTGGATTAGACGAGTACATATGGTTTGTTGGGTTTTTCTCGAT TCAAGGTTGTGGATTGAGCTGGATTAGAATGAGGTTTGTGCAGGTGGGTTACTCTTCTCCTGTTGAGTACCAAATCCTTCAAGAACTTGGTCTCTCTGTT GAAGAGTACTCAGTTTTCGGGTCGATGATGATCGTTGGAGGGCTAGTGGGTTCCATAGGAGGTGGCAAGATTGCAGAACTCGTTGGGAGGAAACGTACAA TCCTGGGTTTGGATGGTCTGTTCATAGTTGGATGGGTGATAATTGCAACTGCAAAGGGTGCTTTGCAACTTGACTTTGGAAGGCTGTTGCTTGGGATTGC ATCAACCATCACTCTTTATCTGGCACCGATTTATGTTGCAGAGATCGCACCAAGGAACTTAAGGGGAGCTGCAGTCTCAGTCACGCAGTTGACTATGATT TGCAGTATTTCGCTCACGTTCCTAGTCGGCTCCTTCATCAACTGGCGTACCATGGCACTAATAGGAGCAGCTCCAGGTTTAGTACAGCTACTCCTCACAT TCTTCATTCCTGAGTCCCCTAGGTGGCTGGCTAAAAGTGGAAAGGAGAAGGAGTTTGAAGCTGCATTGGTAAGGCTTAGAGGAGCAAATGCTGATATTTC ATGGGAAGTTAACGAAATCAAGGATTATACCGAAACAATCCAGTCATTATCGAAGGACAGCAGCAGCGTATTCGATCTGTTTCAGAAACAGTATGCACTT CCTTTAATAGTCGGAAATGGGCTAATGGTGCTGCAGCAGTTGTCGGGGTTGAATTCGTACACATTATACACCGGTGCTATCTTCGCCTCTGCAGGAATCC CAAATACTACAGGGTTCCTGACAGTGTCAGCTTTCCAGTTTGGAGGCACTGTGTTTACTGCTCTGGCTATGGACAGATATGGAAGAAGACCACTGTTACT AGTTACAGTCATTGGAACATGCTTTGGAAGCTTGCTTACTGCACTGTCATTCATCCTACATGGCTATGAAGGATGGAGTAAAGTGACTCCAATTCTGGCA CTACTGAGTGTTCTGGTGTACTCAGGGTCCATGTCAGTTGGAAATGGGATCCCTTGGATAATCATAGCCGAGAAGCTCTCGGAAGCGCTGAGGTTTGAAC AGTTCTTCTACGAGATTGACATGTTTCGTAACGAGTTATCGTGTTTGTTTTTGCCCTCTTACTCAGATATTCCCTCTAAACATAAAAGGATCAGCTGGGA CAATGTGCTGCCTTTCCTTCAACCTTTCTTCTCTGTTGGTCTCATTCACTTTCCAATCTTTGCTTCAATGGAGCCCTTCAGATTTTTTACAATGACAGCG ACTCTGAAAGTCGTGACTGTTTCCGTTCTCCTTATGCTTTTCTCATGTACATTGATCGTAAGAGAAACTCATGCTCAAGATGACATCATCGGGAATGTAG GTGCTGACGCAGGAGCTGATGATATCACGGTGATGCCAGTGACCACACCGGCCGCAGGCAAGCCCGTCGAAAAAGGCGAGGAGAAAGAAGATGAGAAGAA GAAGGAGAAAAAGGTGCCCAAGATAGAAGATAAGAAAGACGATGATAAAAGGGACGACGAGAAAAAAAAGGACAACGAGAAGAAAAAAGAGAAGAAGGAC GACGAGAAGAAAAAGAGTAAGAAAGGTGGTGATAAGGATGACGATGAGAAAAAGGAAAAGAAAGATAAGAAGAAGGACAAAAAGGATGATAAAGACGAGA AGGACGAGAAAAAGAAAAAGAAGAGTGAGAAGGATGATGATGATGAGAAGGATGACAAGAAGAAGGAGAAGAAGGATGAGAAGAAAAAGAAGGAAAAGAA GGACGGCGATAAAAATGAAAAGAAAAATGATGAGGAGAAGAAAGATAAGAAGAAGAAGGACACATACAATGATGATAAAAAATCGAAAAAAAATGATGGA AAAAAGGGCGAGAAAAAGGAAAAAAAGAAGGATGACAAAAAAGAAAAAAGATGA
AA sequence Show only first row Show all	>Lus10002258 pacid=23153444 polypeptide=Lus10002258 locus=Lus10002258.g ID=Lus10002258.BGIv1.0 annot-version=v1.0 MAGQKSKHRVLLRLSLQPFCSASSPLLVGALLLSLFSVACGCCSTGCTVLKSFGLDEYIWFVGFFSIQGCGLSWIRMRFVQVGYSSPVEYQILQELGLSV EEYSVFGSMMIVGGLVGSIGGGKIAELVGRKRTILGLDGLFIVGWVIIATAKGALQLDFGRLLLGIASTITLYLAPIYVAEIAPRNLRGAAVSVTQLTMI CSISLTFLVGSFINWRTMALIGAAPGLVQLLLTFFIPESPRWLAKSGKEKEFEAALVRLRGANADISWEVNEIKDYTETIQSLSKDSSSVFDLFQKQYAL PLIVGNGLMVLQQLSGLNSYTLYTGAIFASAGIPNTTGFLTVSAFQFGGTVFTALAMDRYGRRPLLLVTVIGTCFGSLLTALSFILHGYEGWSKVTPILA LLSVLVYSGSMSVGNGIPWIIIAEKLSEALRFEQFFYEIDMFRNELSCLFLPSYSDIPSKHKRISWDNVLPFLQPFFSVGLIHFPIFASMEPFRFFTMTA TLKVVTVSVLLMLFSCTLIVRETHAQDDIIGNVGADAGADDITVMPVTTPAAGKPVEKGEEKEDEKKKEKKVPKIEDKKDDDKRDDEKKKDNEKKKEKKD DEKKKSKKGGDKDDDEKKEKKDKKKDKKDDKDEKDEKKKKKSEKDDDDEKDDKKKEKKDEKKKKEKKDGDKNEKKNDEEKKDKKKKDTYNDDKKSKKNDG KKGEKKEKKKDDKKEKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	0	1
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	1.7	0.9460
					Lus10042813 [exp]	4.6	0.9317
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	6.0	0.9256
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	6.7	0.9263
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	7.1	0.9335
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	7.7	0.9203
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038205 [exp]	8.8	0.9189
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	10.2	0.9252
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	10.4	0.9223
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010800 [exp]	11.2	0.8807

Compare expression of checked genes

Lus10002258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.