Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002260 [exp] 261 / 6e-84 AT4G11510 47 / 8e-07 ralf-like 28 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [flax] [poplar] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Lus10002261 pacid=23153440 polypeptide=Lus10002261 locus=Lus10002261.g ID=Lus10002261.BGIv1.0 annot-version=v1.0 ATGATGGCCACTTTGAAATTTGTCACTGTTTTTGCCATTGCCGCAGTTTTGTTAAGTCTACTAATTGTGAGAGAAGTTGAAGCTAAAGAAATCAGTTATG GAGCCATTGGCAGAAATGCTGGGTGTGGTGGAAGAAAGGGAGGGATATGCACACCAGTGCCCTCTAATCCATATCAGAGAGGCTGCGAAAAACAAGCAGG ATGTCGTAGTGGACCGAAAAAGGAAGACCAAGCCTTAGCCGATGATAGTGTGGTGCGAAGAAGTGCAAAGGAAGAAGAAGTGAAGAAAGACACTAACGAT TATGACCTCAGTAAATATTATGACAACGATAAAGAAAAGACCGACGAAAAAGACAAGACGAAAAAAGATGACGGAAGTGACAAAGAAGTAAAAGAGAAGA AAAGCGATGGCGAGAAAGAGGAAGTGAAGCCCACAAAAAATGAGAAAGAAGAGACTAACGATTATGACCTCAGCAAATATTATGACAACGATAAAGAAAA GACCGACGAAAAAGACAAGACGAAGAAAGATGACGGAAGTGACAAAGAAGTAAAAGAGAAGAAAAGCGATGGCGAGAAAGAGGAAGTGAAGCCCACAAAA AATGAGAAAGAAGAGACTAACGATTATGACCTCAGCAAATATTATGACAACGATAAAGAAAAGACCGACGAAAAAGACAAGACGAAGAAAGATGACGGAA GTGACAAAGAAGTAAAAGAGAAGAAAAGCGATGGCGAGAAAGAGGAAGTGAAGCCCACAAAGAAGGAGAAAGAAGAGACTAACGATTATGACCTCAGCAA ATATTATGACAACGATAAAGAAAAGACCGACGAAAAAGACAAGACGAAGAAAGATGACGGAAGTGACAAAGAAGTAAAAGAGAAGAAAAGCGATGGCGAG AAAGAGGAAGTGAAGCCCACAAAAAATGAGAAAGAAGAGACTAACGATTATGACCTCAGCAAATATTATGACAACGATAAAGAAAAGACCGACGAAAAAG ACAAGACGAAGAAAGATGACGGAAGTGACAAAGAAGTAAAAGAGAAGAAAAGCGATGGCGAGAAAGAGGAAGTGAAGCCCACAAAAAATGAGAAAGAAGA GACTAACGATTATGACCTCAGCAAATATTATGACAACGATAAAGAAAAGACCGACGAAAAAGACAAGACGAAGAAAGATGACGGAAGTGACAAAGAAGTA AAAGAGAAGAAAAGCGATGGCGAGAAAGAGGAAGAGAAGCCCATAAACTTGTTAAGTTATAGATAA
AA sequence Show only first row Show all	>Lus10002261 pacid=23153440 polypeptide=Lus10002261 locus=Lus10002261.g ID=Lus10002261.BGIv1.0 annot-version=v1.0 MMATLKFVTVFAIAAVLLSLLIVREVEAKEISYGAIGRNAGCGGRKGGICTPVPSNPYQRGCEKQAGCRSGPKKEDQALADDSVVRRSAKEEEVKKDTND YDLSKYYDNDKEKTDEKDKTKKDDGSDKEVKEKKSDGEKEEVKPTKNEKEETNDYDLSKYYDNDKEKTDEKDKTKKDDGSDKEVKEKKSDGEKEEVKPTK NEKEETNDYDLSKYYDNDKEKTDEKDKTKKDDGSDKEVKEKKSDGEKEEVKPTKKEKEETNDYDLSKYYDNDKEKTDEKDKTKKDDGSDKEVKEKKSDGE KEEVKPTKNEKEETNDYDLSKYYDNDKEKTDEKDKTKKDDGSDKEVKEKKSDGEKEEVKPTKNEKEETNDYDLSKYYDNDKEKTDEKDKTKKDDGSDKEV KEKKSDGEKEEEKPINLLSYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11510		RALFL28	ralf-like 28 (.1)		Lus10002261 [exp]	0	1
AT4G11510		RALFL28	ralf-like 28 (.1)		Lus10002260 [exp]	1.0	0.9817
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	27.2	0.6178
AT1G74770			zinc ion binding (.1)		Lus10008628 [exp]	47.3	0.5083
AT3G54880			unknown protein		Lus10013824 [exp]	62.0	0.5955
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	70.9	0.5788
					Lus10008841 [exp]	155.1	0.5253
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	169.9	0.5218
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10040744 [exp]	172.1	0.5303
					Lus10019699 [exp]	230.0	0.4928

Compare expression of checked genes

Lus10002261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.