Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35690 556 / 0 unknown protein AT1G55915 66 / 3e-11 zinc ion binding (.1) AT1G04850 44 / 0.0003 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G48690 43 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000922 [exp] 941 / 0 AT5G35690 575 / 0.0 unknown protein Lus10016607 [exp] 71 / 6e-13 AT1G55915 431 / 4e-150 zinc ion binding (.1) Lus10017103 [exp] 46 / 8e-05 AT1G04850 573 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10037827 [exp] 46 / 8e-05 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10021798 [exp] 44 / 0.0003 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10034612 [exp] 43 / 0.0006 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160400 [exp] 632 / 0 AT5G35690 440 / 2e-146 unknown protein Potri.011G092900 [exp] 62 / 4e-10 AT1G55915 429 / 5e-149 zinc ion binding (.1) Potri.002G244500 [exp] 49 / 4e-06 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.008G133700 [exp] 45 / 0.0001 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1) Potri.017G056900 [exp] 43 / 0.0006 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G316400 [exp] 42 / 0.0007 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09409 [flax] [poplar] PUB PUB domain CL0126 [flax] [poplar] Peptidase_MA PF08325 [flax] [poplar] WLM WLM domain
Representative CDS sequence Show only first row Show all	>Lus10002262 pacid=23153446 polypeptide=Lus10002262 locus=Lus10002262.g ID=Lus10002262.BGIv1.0 annot-version=v1.0 ATGATCAGTGTGGCCGTTACGTGGAGAGGGAAAAGATACGAGGTGGAAATCGACGGAGGAGCTTGGCTGAAGGACCTTGGAGACGAGTTACAGAAGTTGA CCGATGTGGAGCCAGATACCATGAGGCTTATTGTCCCGCAAGGCAAAAGTTCGAAGCTTGTGTATCCTTTCTCGGTCGAACATTCGAATCTGACTTTACT TGACGCCTCCATTTCCGAGGGGAAGCCTATCAGGATGATGGGAGTGTTTAAGGATGAAGTTGATAGGATTTTACAGAATGCAAAAGTGGACATGAGAATT GCTGGTTTTGACGAGGAAGGACGAAGAATGAGACAGCGGACATCAGTTGGACGTCCTTCGTTGCCTAAGCTTCCGCAAGGATCTTACATCTTTTGTGATT TTCGCACTCTCGCCATTCCAGGGATTGAGTTGAATCCTCCAGCTTCCGAGGCGTTAAAAAGGATGCACATGCTTGCTGCTGATCCTGGAATTATTGCAAT AATGAACAAGCATCGTTGGCGCGTGGGAATAATGACTGAGATGGCTCCTATTGGCTATGTTGGTGTGAGCCCCAAATGCATCCTTGGGTTTAACAAGAAC CACGGCGAGGAGATATCTCTCCGGCTTAGAACTGATGATCTCAAAGGTTTCAGGAAGTACGATAGCATCAAGAAAACGCTTTTGCATGAACTTGCTCACA TGGTTTTCTCAGAACATGATGCAGACTTTTATGCTCTGGATAAGCAGCTGAATCAAGAAGCTGCGACGTTGGATTGGACGAAGGCAAAGGGGCATACTTT AAGTGGAGTCAGCAATTCTGCTGATTATGAAGACGACTTCGACGATGTCAACTACATAGTTTCTTCACAGAAACTGGGAGGAAATGTATCGGATCAGCTG GAAAGCGCCCGTGCTTCTTCAGTGGCTGCTGCCTATCGTCGTTTAGCAAATGTCTCCGAGGCATCTGAGATTGAAGAACCGGACCCTGATGATTCGACCG ATCTGGAAAATGTGCGTGGAATCAGTTTGGTTATCACAGATTCTGATGAAAAATTGTTCGATGATAATAAAGTAGCAAATGTGTCCGAGGCATCTGAGAT GGAAGAACCGGACCCTGATGATTTGACCGATCTGGAAAATGTGCATGGAGTTGGTTCGGTTATCAAGGACGAACCAGATCCTGATGAACAATTGTTCGAT CAAGATGAAGTCCACGATGAGCCTGATCATGATGATCAGTCTTTTGGTCATAAGAACGAGGAACCTGATCCTGATGATCAGTCTTTTGGTCATCAGAACG AGGAGCCAGATCCTGATGATTCTGGAGTACTCCTTTCCCAAGAAACAGCCATGATGCAAATCGATGAGCCTGAACCAGACGAAGAACTGCGAAGGATTCA AGATCCAGTTACAGCTATTTGCAGTCGCCTTACATCGGCAATTCAGTCGCTGCGAGCTGAAGTGAGTAATCCCCTTGAAGCATCAGCTGCTTTGCAAACT CTTTCCAAAATAATCAGGAACGTCATCGAGCATCCTAATGAGACGAAGTTCAGGAAACTACGAAAGGCAAATCCGGTGATCCAGAAGAACATTGCTGCTC ACAAAGCTGCAATGCAGATCCTGGAAGTGGCTGGATTTGTGGAGGAAACTGTTCTTGACGAAAGAGGAAACTCAGAACCTTACTTGACCTTGAAGCGAAA TGACCCTGGTTTGCTGTGGCTTGCTAAGTCATCCCTTGAGGAGGCATCATGA
AA sequence Show only first row Show all	>Lus10002262 pacid=23153446 polypeptide=Lus10002262 locus=Lus10002262.g ID=Lus10002262.BGIv1.0 annot-version=v1.0 MISVAVTWRGKRYEVEIDGGAWLKDLGDELQKLTDVEPDTMRLIVPQGKSSKLVYPFSVEHSNLTLLDASISEGKPIRMMGVFKDEVDRILQNAKVDMRI AGFDEEGRRMRQRTSVGRPSLPKLPQGSYIFCDFRTLAIPGIELNPPASEALKRMHMLAADPGIIAIMNKHRWRVGIMTEMAPIGYVGVSPKCILGFNKN HGEEISLRLRTDDLKGFRKYDSIKKTLLHELAHMVFSEHDADFYALDKQLNQEAATLDWTKAKGHTLSGVSNSADYEDDFDDVNYIVSSQKLGGNVSDQL ESARASSVAAAYRRLANVSEASEIEEPDPDDSTDLENVRGISLVITDSDEKLFDDNKVANVSEASEMEEPDPDDLTDLENVHGVGSVIKDEPDPDEQLFD QDEVHDEPDHDDQSFGHKNEEPDPDDQSFGHQNEEPDPDDSGVLLSQETAMMQIDEPEPDEELRRIQDPVTAICSRLTSAIQSLRAEVSNPLEASAALQT LSKIIRNVIEHPNETKFRKLRKANPVIQKNIAAHKAAMQILEVAGFVEETVLDERGNSEPYLTLKRNDPGLLWLAKSSLEEAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35690			unknown protein		Lus10002262 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Lus10026503 [exp]	1.4	0.9419
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	9.8	0.9167
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	12.8	0.9097
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	13.5	0.9150
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	16.1	0.9103
AT1G01490			Heavy metal transport/detoxifi...		Lus10036395 [exp]	16.5	0.8998
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	16.9	0.9005
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	19.6	0.9055
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	20.0	0.9050
AT5G07610			F-box family protein (.1)		Lus10041733 [exp]	23.5	0.8831

Compare expression of checked genes

Lus10002262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.