Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35680 190 / 3e-63 Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT2G04520 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000920 [exp] 198 / 2e-66 AT2G04520 252 / 1e-87 Nucleic acid-binding, OB-fold-like protein (.1) Lus10033806 [exp] 196 / 1e-65 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10014627 [exp] 196 / 1e-65 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10020713 [exp] 130 / 9e-40 AT2G04520 169 / 4e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029827 [exp] 129 / 6e-39 AT2G04520 168 / 9e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10042438 [exp] 90 / 7e-24 AT2G04520 100 / 5e-28 Nucleic acid-binding, OB-fold-like protein (.1) Lus10034249 [exp] 43 / 1e-05 AT2G40780 197 / 4e-65 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10029014 [exp] 42 / 5e-05 AT2G40780 199 / 4e-66 Nucleic acid-binding, OB-fold-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219200 [exp] 195 / 4e-65 AT2G04520 198 / 2e-66 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G160900 [exp] 192 / 6e-64 AT2G04520 200 / 3e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G031700 [exp] 160 / 2e-51 AT2G04520 176 / 1e-57 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G093801 [exp] 79 / 2e-20 AT2G04520 76 / 2e-19 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10002264 pacid=23153449 polypeptide=Lus10002264 locus=Lus10002264.g ID=Lus10002264.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACAAAGGAAAAGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAGGCTGATGATGAGAAGCGCGAGCTGATCTTCAAGGAAGACGGACAGG AGTACGCTCAGGTGATGCGAATGCTCGGGAACGGACGATGCGAGGTCACTTGCATCGATGGGGTGAAACGCCTGAGCCATATCCGCGGAAAAATGCACAA GAAGGTCTGGATCGCGGCTGGTGACATAATCCTTGTAGGGCTGAGGGATTATCAAGATGACAAGGCTGATGTCATCCTAAAGTACATGCCTGATGAGGCC AGGCTTCTCAAGGCGTATGGCGAGTTGCCAGAGAATATCCGTCTCAACGAGGGTATTGCTGGTGGTCTTGATGAGGAGGATGATGGCGCTGGTGATGACT ACATCGAGTTTGAAGACGAAGATATCGACAAGATCTAA
AA sequence Show only first row Show all	>Lus10002264 pacid=23153449 polypeptide=Lus10002264 locus=Lus10002264.g ID=Lus10002264.BGIv1.0 annot-version=v1.0 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVMRMLGNGRCEVTCIDGVKRLSHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA RLLKAYGELPENIRLNEGIAGGLDEEDDGAGDDYIEFEDEDIDKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10002264 [exp]	0	1
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10037699 [exp]	1.4	0.9073
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	1.4	0.9040
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	2.4	0.9027
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	3.5	0.8883
AT1G25682			Family of unknown function (DU...		Lus10034268 [exp]	5.7	0.8756
AT5G04000			unknown protein		Lus10042034 [exp]	6.0	0.8588
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	7.4	0.8863
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10022253 [exp]	8.8	0.8682
AT4G39235			unknown protein		Lus10004160 [exp]	10.0	0.8488
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	10.2	0.8813

Compare expression of checked genes

Lus10002264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.