Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07172 [flax] [poplar] GRP Glycine rich protein family
Representative CDS sequence Show only first row Show all	>Lus10002266 pacid=23153429 polypeptide=Lus10002266 locus=Lus10002266.g ID=Lus10002266.BGIv1.0 annot-version=v1.0 ATGGCATCTTCAAAGACTCTTCTTTTCCTTCTGTTTGCTCTCTTTGCTCTTGTTCTCATTGTTTCTGCTGAAGTCTCCTCCACCACTTCCACGAGTGGTG ATGAAGTGAAAGGTGCGGACCAATACAGAGGAGGAGGCGGCGGCGGTGACTATCCTGGCCGTGGAGGAGGCGGCGGTGGTGACTATCCTGGCCGTGGAGG TGGACGCGGTGGTGGCCACCCTGGCCGTGGAGGAGGAGGCGGTGGAAGGTGCTACTACGGTTGTTGCAGAGGGTACCGTTACTCGTACGGATGCAAAAAG TGTTGCGCCCATGCTAATGAGGCTCCTGATGCTTTCTTCGAGGACGATGTCAAGAACTAG
AA sequence Show only first row Show all	>Lus10002266 pacid=23153429 polypeptide=Lus10002266 locus=Lus10002266.g ID=Lus10002266.BGIv1.0 annot-version=v1.0 MASSKTLLFLLFALFALVLIVSAEVSSTTSTSGDEVKGADQYRGGGGGGDYPGRGGGGGGDYPGRGGGRGGGHPGRGGGGGGRCYYGCCRGYRYSYGCKK CCAHANEAPDAFFEDDVKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002266 [exp]	0	1
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	1.7	0.9630
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10036665 [exp]	2.4	0.9476
					Lus10008816 [exp]	5.1	0.9622
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	6.0	0.9503
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10025842 [exp]	6.7	0.9339
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	7.9	0.9513
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10015338 [exp]	8.9	0.8626
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	10.4	0.9321
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	10.5	0.9500
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	11.0	0.9436

Compare expression of checked genes

Lus10002266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.