Plant FIBer expression Database

Lus10002267 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000918
[exp]
43 / 0.0002 ND /
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07172 GRP Glycine rich protein family
Representative CDS sequence
>Lus10002267 pacid=23153450 polypeptide=Lus10002267 locus=Lus10002267.g ID=Lus10002267.BGIv1.0 annot-version=v1.0
ATGGGTTCGAAGAAGACCTGTGTCGTTTTAGCTCTTTTGTTCTTCGCTGCTGTCCTCGCCGTCTCCGCCAACTTGGCGGCGGCCGACCAAACTCCTGATG
AAGTGGTGGGAGTGCAAGCCGACGTCGAGGAAAGCAAGCGACATGGATGGGGAGGCCATGGCGGAGGGCATGGATGGGGAGGCGGCGGTGGAGGACACGG
GTGGGGAGGCGGTGGCCGGAAAGGATGGGGCGGAGGACGTGGTGGGAAGTGTTGTGGTAAGGAGGAGGAAGAAGCTGATCAAGCTGCAGGGGCCAGGGCG
GAGGCCAGGGTCAGGGTGGTCAAGGCGGAGGTCAAGGTCAAGGTGGAAAGGGTCAAGGAGGACAAGGCGGAGGTCAAGGTCAAGGTGGAAAAGGCCAAGG
AGGACAAGGAGGAAGTGGAGGTGGAAAGGGACACGGTGGTCAAGGTCAAGGAGGCCAAGGTGGTGGCCAAGGAGGACAAGGCGGTGGAAAAGGCCACGGA
GGCCAAGGTCAAGGTGGCCAGGGTGGAGGTCAGGGCGGCCAAAGCGGTGGAAAGGGCCAGGGTGGAGGCCAGAGCGGCGGTAAAGGCCAGGGAGGACAAG
GAGGCCAGGGTGGAGCCCAGGGCGGCGGTAAAGGCCAAGGAGGACAAGGCGGCCAGGGTGGAGGCCAGAGCGGCGGGGAAGGCCAGGGAGGACAAGGAGG
CCAGGGTGGAGCCCAGGGCGGCGGTAAAGGCCAAGGAGGACAAGGCGGCCAGGGTGGAGGCCAGGGCGGCGGTAAAGGCCAAGGAAGGACAAGGTGGTCA
GGGTGGAAGCCAGAGCGGCGGTAAAGGCCAGGGAGGACAAAGTGGTGGACATGGAGGCGGACAAGGACAAGGTGGACAAGGCCAGGGTGGTCAAACCGGT
GGACGTGGAGGCGGTGGCCAGGGAGGAGGCAGCGGCGGAAGTGGTGGCGGTGGTGGACAGTGA
AA sequence
>Lus10002267 pacid=23153450 polypeptide=Lus10002267 locus=Lus10002267.g ID=Lus10002267.BGIv1.0 annot-version=v1.0
MGSKKTCVVLALLFFAAVLAVSANLAAADQTPDEVVGVQADVEESKRHGWGGHGGGHGWGGGGGGHGWGGGGRKGWGGGRGGKCCGKEEEEADQAAGARA
EARVRVVKAEVKVKVERVKEDKAEVKVKVEKAKEDKEEVEVERDTVVKVKEAKVVAKEDKAVEKATEAKVKVARVEVRAAKAVERARVEARAAVKAREDK
EARVEPRAAVKAKEDKAARVEARAAGKAREDKEARVEPRAAVKAKEDKAARVEARAAVKAKEGQGGQGGSQSGGKGQGGQSGGHGGGQGQGGQGQGGQTG
GRGGGGQGGGSGGSGGGGGQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10002267
[exp]
0 1
Lus10005025
[exp]
3.7 0.8229
Lus10026021
[exp]
8.5 0.6944
AT2G26850 F-box family protein (.1) Lus10036444
[exp]
8.5 0.7336
Lus10019815
[exp]
8.9 0.7523
AT3G55090 ABCG16 ATP-binding cassette G16, ABC-... Lus10025150
[exp]
10.1 0.7440
AT1G70710 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolas... Lus10031139
[exp]
10.2 0.7211
AT4G37850 bHLH bHLH025 basic helix-loop-helix (bHLH) ... Lus10009726
[exp]
15.4 0.7003
AT5G01300 PEBP (phosphatidylethanolamine... Lus10003388
[exp]
16.6 0.7071
AT3G51560 Disease resistance protein (TI... Lus10029858
[exp]
20.2 0.6666
AT3G04720 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-rela... Lus10020250
[exp]
31.1 0.6409

Lus10002267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.